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Sample GSM5389 Query DataSets for GSM5389
Status Public on Apr 02, 2003
Title S52-PN2
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S52-PN2
mAdb experiment ID: 25489
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 -0.0624823 1 1 1 1591 497 221 70 1658 404 239 89 0 0.866 -0.0624823
159763 -0.0052433 2 1 1 1957 595 215 69 1818 328 236 91 0 0.988 -0.0052433
159764 -0.0061233 3 1 1 1710 424 189 62 1596 349 213 84 0 0.986 -0.0061233
159765 -0.0301183 4 1 1 612 224 175 66 610 158 190 79 0 0.933 -0.0301183
159766 -0.0996333 1 2 1 534 186 223 82 593 222 242 92 0 0.795 -0.0996333
159767 0.0064663 2 2 1 994 286 223 69 939 213 258 229 0 1.015 0.0064663
159768 0.1089033 3 2 1 1210 267 190 60 930 227 218 84 0 1.285 0.1089033
159769 0.0034613 4 2 1 1077 397 163 57 1003 283 190 76 0 1.008 0.0034613
159770 0.0374263 1 3 1 1001 280 216 71 896 225 250 94 0 1.090 0.0374263
159771 0.0081743 2 3 1 942 196 209 71 893 204 248 102 0 1.019 0.0081743
159772 -0.1408623 3 3 1 475 205 183 64 571 224 209 79 0 0.723 -0.1408623
159773 -0.0803993 4 3 1 522 145 167 59 580 202 197 82 0 0.831 -0.0803993
159774 0.2513953 1 4 1 1906 597 227 71 1103 359 259 97 0 1.784 0.2513953
159775 -0.2083093 2 4 1 1138 278 205 64 1593 305 240 87 0 0.619 -0.2083093
159776 0.0870713 3 4 1 663 196 182 65 566 166 213 81 0 1.222 0.0870713
159777 -0.1944993 4 4 1 427 199 172 59 548 198 190 75 0 0.639 -0.1944993
159778 -0.0915153 1 5 1 701 207 245 77 776 277 271 96 0 0.810 -0.0915153
159779 -0.1938203 2 5 1 783 223 197 66 1050 325 229 85 0 0.640 -0.1938203
159780 -0.4522253 3 5 1 642 150 183 61 1377 407 212 81 0 0.353 -0.4522253
159781 -0.1890963 4 5 1 425 195 171 60 539 207 187 82 0 0.647 -0.1890963

Total number of rows: 9128

Table truncated, full table size 666 Kbytes.




Supplementary data files not provided
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