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Sample GSM5392 Query DataSets for GSM5392
Status Public on Apr 02, 2003
Title S51-PN1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S51-PN1
mAdb experiment ID: 25492
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.3445893 1 1 1 2944 961 81 35 1758 302 691 130 0 2.211 0.3445893
159763 0.3426203 2 1 1 3810 332 86 29 2055 210 661 101 0 2.201 0.3426203
159764 0.3762123 3 1 1 4495 1151 88 30 2119 498 592 96 0 2.378 0.3762123
159765 0.5116163 4 1 1 2381 358 91 54 1118 139 537 95 0 3.248 0.5116163
159766 -0.2740883 1 2 1 272 84 83 29 955 125 662 104 0 0.532 -0.2740883
159767 0.1461283 2 2 1 1252 268 88 31 1359 148 674 98 0 1.400 0.1461283
159768 0.2247923 3 2 1 1418 439 88 28 1248 220 595 96 0 1.678 0.2247923
159769 0.0553783 4 2 1 1821 605 85 29 1799 418 540 92 0 1.136 0.0553783
159770 -0.2013493 1 3 1 718 343 84 31 1521 396 690 120 0 0.629 -0.2013493
159771 0.0982983 2 3 1 1141 388 91 64 1347 171 657 113 0 1.254 0.0982983
159772 -0.1870873 3 3 1 328 119 85 28 900 175 592 97 0 0.650 -0.1870873
159773 0.0000003 4 3 1 647 258 85 29 1002 208 539 92 0 1.000 0.0000003
159774 0.3675423 1 4 1 3069 951 87 30 1760 285 706 109 0 2.331 0.3675423
159775 -0.0357403 2 4 1 1481 394 90 30 1891 255 646 107 0 0.921 -0.0357403
159776 0.0354303 3 4 1 581 151 90 31 970 186 597 100 0 1.085 0.0354303
159777 -0.2471843 4 4 1 377 118 86 29 975 176 551 94 0 0.566 -0.2471843
159778 -0.1203313 1 5 1 436 158 83 30 1090 178 706 110 0 0.758 -0.1203313
159779 -0.2048153 2 5 1 633 157 90 269 1410 191 693 2534 0 0.624 -0.2048153
159780 -0.4089353 3 5 1 476 135 85 26 1413 267 586 103 0 0.390 -0.4089353
159781 -0.2798413 4 5 1 260 102 88 31 819 209 549 89 0 0.525 -0.2798413

Total number of rows: 9128

Table truncated, full table size 662 Kbytes.




Supplementary data files not provided
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