NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM60390 Query DataSets for GSM60390
Status Public on Nov 15, 2005
Title Gastrin Knockout parietal cell replicate 3
Sample type RNA
 
Source name Gastrin Knockout fundus
Organism Mus musculus
Characteristics Gastrin Knockout, 2 month old male mice parietal cell
Extracted molecule total RNA
Extraction protocol Approximately10-14Gastrin Knockout mice were dissected and the fundus was used to isolate parietal cells and purified by flow cytometry. Total RNA was extracted from the purified parietal cells by Trizol followed by an RNeasy kit (Qiagen).
Label biotin
Label protocol Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Gastrin Knockout purified (>90% pure) parietal cells
Data processing Affymetrix Microarray Suite version 4.0
 
Submission date Jun 06, 2005
Last update date Nov 15, 2005
Contact name Linda Samuelson
E-mail(s) [email protected]
Phone 734-764-9448
Fax 734-936-8813
Organization name University of Michigan
Department Molecular and Integrative Physiology
Street address MED SCI II, # 7761, 1150 W. MEDICAL CENTER DRIVE
City ANN ARBOR
State/province MI
ZIP/Postal code 48109
Country USA
 
Platform ID GPL81
Series (1)
GSE2772 Parietal cell gene expression in the presence and absence of gastrin

Data table header descriptions
ID_REF
VALUE probe-set signal intensity from Ann Arbor Suite
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
96643_at 2006 0.002
92805_s_at 249 0.016
101326_at 284 0.041
101455_at 302 0.014
102737_at 403 0.0076
92492_at 641 0.00051
97426_at 9305 0.00023
96188_at 251 0.021
99138_at 321 0.0031
104333_at 865 0.00039
103949_at 798 0.0017
101294_g_at 966 0.00074
101542_f_at 3654 0.00028
160901_at 13500 0.00023
92507_at 289 0.0014
96629_at 1379 0.00034
92925_at 1132 0.0031
99926_at 3174 0.00049
102292_at 2902 0.00033
96336_at 200 0.075

Total number of rows: 12488

Table truncated, full table size 246 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap