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Sample GSM60909 Query DataSets for GSM60909
Status Public on Jun 15, 2005
Title Fetal heart 3 ug/kg TCDD rep2
Sample type RNA
 
Source name T3 fetal heart (treated on gd14.5 via oral gavage, collected on gd17.5)
Organism Mus musculus
Characteristics C57Bl6N Mouse
gd17.5 fetal heart
Extracted molecule total RNA
Extraction protocol Trizol reagent was used to isolate total RNA from whole d17.5 fetal mouse hearts.
Label Labeling and probe preparation was performed exactly as recommended by Affymetrix.
Label protocol Labeling and probe preparation was performed exactly as recommended by Affymetrix, using the Superscript Choice System for RT/PCR (Gibco/BRL Life Technologies) for cDNA synthesis and the RNA Transcript Labeling Kit (ENZO) for cRNA preparation.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description gd17.5 fetal mouse hearts
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jun 14, 2005
Last update date Jun 14, 2005
Contact name Evan A. Thackaberry
E-mail(s) [email protected]
Phone 505 272 6535
Fax 505 272-6749
Organization name University of New Mexico
Department College of Pharmacy
Lab M.K. Walker
Street address 2502 Marble N.E.
City Albuquerque
State/province NM
ZIP/Postal code 87131
Country USA
 
Platform ID GPL81
Series (1)
GSE2812 Fetal mouse heart, TCDD dose-response series

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
100001_at 4.6 A 0.939581
100002_at 120.6 A 0.098054
100003_at 53.6 A 0.098054
100004_at 329.6 P 0.000266
100005_at 547 P 0.000673
100006_at 142.8 P 0.000805
100007_at 708.2 P 0.000562
100009_r_at 189.3 P 0.000219
100010_at 200.9 P 0.004863
100011_at 393.6 P 0.000388
100012_at 245.2 A 0.138765
100013_at 275.3 P 0.035163
100014_at 187.9 P 0.000388
100015_at 360.1 P 0.001602
100016_at 123.4 P 0.000219
100017_at 74.8 M 0.05447
100018_at 186.8 A 0.218983
100019_at 2286.5 P 0.000322
100020_at 640.9 P 0.000959
100021_at 41.7 A 0.397994

Total number of rows: 12488

Table truncated, full table size 321 Kbytes.




Supplementary file Size Download File type/resource
GSM60909.CEL.gz 2.8 Mb (ftp)(http) CEL

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