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GEO accession:
Sample GSM62730
Query DataSets for GSM62730
Status
Public on May 22, 2007
Title
C10 ctrl liver 7 months No. 1
Sample type
RNA
Source name
Liver
Organism
Rattus norvegicus
Characteristics
ctrl liver 7 months
Treatment protocol
Extracted molecule
total RNA
Extraction protocol
Clonetech
Label
biotin
Label protocol
5 ug of cRNA was used to make biotinylated RNA
Hybridization protocol
standard Affymetrix procedure
Scan protocol
standard Affymetrix procedure
Description
C10 ctrl liver 7 months
Data processing
Affymetrix Microarray Suite version 5.0 followed by GEA
Submission date
Jun 29, 2005
Last update date
May 22, 2007
Contact name
James Holzwarth
E-mail(s)
[email protected]
Phone
+41 21 785 8909
Organization name
Nestle Research Center
Department
Bioanalytical Sciences
Street address
vers chez les blanc
City
Lausanne
State/province
Vaud
ZIP/Postal code
1000
Country
Switzerland
Platform ID
GPL85
Series (2)
GSE2852
Ochratoxin A study on rat liver and kidney gene expression
GSE3304
Comparison of gene expression in conventional and germ-free intestine
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
1.89807
A
0.910522
AFFX-MurIL10_at
1.75358
A
0.749204
AFFX-MurIL4_at
0.340386
A
0.998898
AFFX-MurFAS_at
0.975624
A
0.834139
AFFX-BioB-5_at
32.6326
A
0.250796
AFFX-BioB-M_at
116.543
P
0.000389797
AFFX-BioB-3_at
62.2538
P
0.0044838
AFFX-BioC-5_at
164.712
P
0.000169227
AFFX-BioC-3_at
99.1173
P
0.000224668
AFFX-BioDn-5_at
143.074
P
0.00141043
AFFX-BioDn-3_at
833.279
P
0.000296708
AFFX-CreX-5_at
1595.95
P
4.43E-05
AFFX-CreX-3_at
2861.04
P
4.43E-05
AFFX-BioB-5_st
43.9386
A
0.0629293
AFFX-BioB-M_st
27.5067
A
0.262827
AFFX-BioB-3_st
6.89597
A
0.860518
AFFX-BioC-5_st
3.12451
A
0.945787
AFFX-BioC-3_st
1.1525
A
0.921998
AFFX-BioDn-5_st
21.4443
A
0.195266
AFFX-BioDn-3_st
31.4634
M
0.0464816
Total number of rows:
8799
Table truncated, full table size
283 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM62730.CEL.gz
1.9 Mb
(ftp)
(http)
CEL
GSM62730.EXP.gz
489 b
(ftp)
(http)
EXP
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