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Sample GSM62736 Query DataSets for GSM62736
Status Public on May 22, 2007
Title T18 OTA kidney 7 months No. 7
Sample type RNA
 
Source name Kidney
Organism Rattus norvegicus
Characteristics OTA kidney 7 months
Treatment protocol Male Fischer 344 rats were administered Ochratoxin A (OTA) through the diet over two years. The initial daily dietary intake was 300 mg OTA/kg bw, but was held at 100 mg/rat after animal reached 333 g.
Extracted molecule total RNA
Extraction protocol Clonetech
Label biotin
Label protocol 5 ug of cRNA was used to make biotinylated RNA
 
Hybridization protocol standard Affymetrix procedure
Scan protocol standard Affymetrix procedure
Description T18 OTA kidney 7 months
Data processing Affymetrix Microarray Suite version 5.0 followed by GEA
 
Submission date Jun 29, 2005
Last update date May 22, 2007
Contact name James Holzwarth
E-mail(s) [email protected]
Phone +41 21 785 8909
Organization name Nestle Research Center
Department Bioanalytical Sciences
Street address vers chez les blanc
City Lausanne
State/province Vaud
ZIP/Postal code 1000
Country Switzerland
 
Platform ID GPL85
Series (2)
GSE2852 Ochratoxin A study on rat liver and kidney gene expression
GSE3304 Comparison of gene expression in conventional and germ-free intestine

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 2.29088 A 0.834139
AFFX-MurIL10_at 2.67629 A 0.60308
AFFX-MurIL4_at 1.96889 A 0.794288
AFFX-MurFAS_at 0.815849 A 0.783476
AFFX-BioB-5_at 39.1027 A 0.156732
AFFX-BioB-M_at 52.3317 P 0.0012475
AFFX-BioB-3_at 24.4743 P 0.0166701
AFFX-BioC-5_at 98.2985 P 0.000389797
AFFX-BioC-3_at 43.3697 P 0.00227496
AFFX-BioDn-5_at 85.6663 P 0.002867
AFFX-BioDn-3_at 500.056 P 0.000753643
AFFX-CreX-5_at 904.066 P 4.43E-05
AFFX-CreX-3_at 1202.74 P 4.43E-05
AFFX-BioB-5_st 16.9907 A 0.147939
AFFX-BioB-M_st 10.1715 A 0.440646
AFFX-BioB-3_st 2.25013 A 0.957038
AFFX-BioC-5_st 2.97908 A 0.852061
AFFX-BioC-3_st 0.681912 A 0.868639
AFFX-BioDn-5_st 22.9068 A 0.205732
AFFX-BioDn-3_st 5.53688 A 0.51489

Total number of rows: 8799

Table truncated, full table size 283 Kbytes.




Supplementary file Size Download File type/resource
GSM62736.CEL.gz 1.8 Mb (ftp)(http) CEL
GSM62736.EXP.gz 477 b (ftp)(http) EXP

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