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GEO accession:
Sample GSM62740
Query DataSets for GSM62740
Status
Public on May 22, 2007
Title
C4 CTRL liver 4 months No. 11
Sample type
RNA
Source name
Liver
Organism
Rattus norvegicus
Characteristics
CTRL liver 4 months
Treatment protocol
Extracted molecule
total RNA
Extraction protocol
Clonetech
Label
biotin
Label protocol
5 ug of cRNA was used to make biotinylated RNA
Hybridization protocol
standard Affymetrix procedure
Scan protocol
standard Affymetrix procedure
Description
C4 CTRL liver 4 months
Data processing
Affymetrix Microarray Suite version 5.0 followed by GEA
Submission date
Jun 29, 2005
Last update date
May 22, 2007
Contact name
James Holzwarth
E-mail(s)
[email protected]
Phone
+41 21 785 8909
Organization name
Nestle Research Center
Department
Bioanalytical Sciences
Street address
vers chez les blanc
City
Lausanne
State/province
Vaud
ZIP/Postal code
1000
Country
Switzerland
Platform ID
GPL85
Series (2)
GSE2852
Ochratoxin A study on rat liver and kidney gene expression
GSE3304
Comparison of gene expression in conventional and germ-free intestine
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
4.60003
A
0.783476
AFFX-MurIL10_at
2.34052
A
0.814869
AFFX-MurIL4_at
0.404752
A
0.999338
AFFX-MurFAS_at
1.83692
A
0.712257
AFFX-BioB-5_at
27.0784
A
0.39692
AFFX-BioB-M_at
87.025
P
0.00359458
AFFX-BioB-3_at
40.6608
P
0.00933744
AFFX-BioC-5_at
194.227
P
0.000224668
AFFX-BioC-3_at
124.371
P
8.14E-05
AFFX-BioDn-5_at
201.119
P
0.00159257
AFFX-BioDn-3_at
664.665
P
0.000195116
AFFX-CreX-5_at
928.61
P
4.43E-05
AFFX-CreX-3_at
1920.01
P
4.43E-05
AFFX-BioB-5_st
37.2822
A
0.0629293
AFFX-BioB-M_st
28.683
A
0.205732
AFFX-BioB-3_st
7.33788
A
0.760937
AFFX-BioC-5_st
3.27342
A
0.9273
AFFX-BioC-3_st
1.94313
A
0.916408
AFFX-BioDn-5_st
35.6596
A
0.139482
AFFX-BioDn-3_st
34.5267
A
0.108979
Total number of rows:
8799
Table truncated, full table size
281 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM62740.CEL.gz
1.9 Mb
(ftp)
(http)
CEL
GSM62740.EXP.gz
487 b
(ftp)
(http)
EXP
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