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GEO accession:
Sample GSM62742
Query DataSets for GSM62742
Status
Public on May 22, 2007
Title
C4 CTRL kidney 4 months No. 13
Sample type
RNA
Source name
Kidney
Organism
Rattus norvegicus
Characteristics
CTRL kidney 4 months
Treatment protocol
Extracted molecule
total RNA
Extraction protocol
Clonetech
Label
biotin
Label protocol
5 ug of cRNA was used to make biotinylated RNA
Hybridization protocol
standard Affymetrix procedure
Scan protocol
standard Affymetrix procedure
Description
C4 CTRL kidney 4 months
Data processing
Affymetrix Microarray Suite version 5.0 followed by GEA
Submission date
Jun 29, 2005
Last update date
May 22, 2007
Contact name
James Holzwarth
E-mail(s)
[email protected]
Phone
+41 21 785 8909
Organization name
Nestle Research Center
Department
Bioanalytical Sciences
Street address
vers chez les blanc
City
Lausanne
State/province
Vaud
ZIP/Postal code
1000
Country
Switzerland
Platform ID
GPL85
Series (2)
GSE2852
Ochratoxin A study on rat liver and kidney gene expression
GSE3304
Comparison of gene expression in conventional and germ-free intestine
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
1.77503
A
0.868639
AFFX-MurIL10_at
3.49224
A
0.617401
AFFX-MurIL4_at
0.608476
A
0.852061
AFFX-MurFAS_at
0.73986
A
0.897835
AFFX-BioB-5_at
87.5242
P
0.0219019
AFFX-BioB-M_at
164.385
P
0.00010954
AFFX-BioB-3_at
74.9239
P
0.000224668
AFFX-BioC-5_at
213.089
P
0.000195116
AFFX-BioC-3_at
135.871
P
0.00010954
AFFX-BioDn-5_at
214.563
P
0.000258358
AFFX-BioDn-3_at
1225.43
P
9.45E-05
AFFX-CreX-5_at
2517.53
P
4.43E-05
AFFX-CreX-3_at
3701.01
P
4.43E-05
AFFX-BioB-5_st
20.7278
A
0.165861
AFFX-BioB-M_st
19.1995
A
0.287743
AFFX-BioB-3_st
4.73501
A
0.794268
AFFX-BioC-5_st
4.61163
A
0.843268
AFFX-BioC-3_st
1.1625
A
0.916408
AFFX-BioDn-5_st
25.3536
A
0.227636
AFFX-BioDn-3_st
35.9537
M
0.0429619
Total number of rows:
8799
Table truncated, full table size
284 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM62742.CEL.gz
1.8 Mb
(ftp)
(http)
CEL
GSM62742.EXP.gz
488 b
(ftp)
(http)
EXP
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