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Sample GSM62766 Query DataSets for GSM62766
Status Public on May 22, 2007
Title T8 OTA liver 4 months No. 37
Sample type RNA
 
Source name Liver
Organism Rattus norvegicus
Characteristics OTA liver 4 months
Treatment protocol Male Fischer 344 rats were administered Ochratoxin A (OTA) through the diet over two years. The initial daily dietary intake was 300 mg OTA/kg bw, but was held at 100 mg/rat after animal reached 333 g.
Extracted molecule total RNA
Extraction protocol Clonetech
Label biotin
Label protocol 5 ug of cRNA was used to make biotinylated RNA
 
Hybridization protocol standard Affymetrix procedure
Scan protocol standard Affymetrix procedure
Description T8 OTA liver 4 months
Data processing Affymetrix Microarray Suite version 5.0 followed by GEA
 
Submission date Jun 29, 2005
Last update date May 22, 2007
Contact name James Holzwarth
E-mail(s) [email protected]
Phone +41 21 785 8909
Organization name Nestle Research Center
Department Bioanalytical Sciences
Street address vers chez les blanc
City Lausanne
State/province Vaud
ZIP/Postal code 1000
Country Switzerland
 
Platform ID GPL85
Series (2)
GSE2852 Ochratoxin A study on rat liver and kidney gene expression
GSE3304 Comparison of gene expression in conventional and germ-free intestine

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 2.05249 A 0.891021
AFFX-MurIL10_at 2.13375 A 0.724854
AFFX-MurIL4_at 0.330417 A 0.999419
AFFX-MurFAS_at 1.31664 A 0.804734
AFFX-BioB-5_at 46.4749 A 0.156732
AFFX-BioB-M_at 152.094 P 0.000340305
AFFX-BioB-3_at 69.9874 P 0.000389797
AFFX-BioC-5_at 202.334 P 0.00010954
AFFX-BioC-3_at 126.498 P 0.000509415
AFFX-BioDn-5_at 292.453 P 0.000509415
AFFX-BioDn-3_at 1174.74 P 0.00010954
AFFX-CreX-5_at 2822.23 P 4.43E-05
AFFX-CreX-3_at 4760.62 P 4.43E-05
AFFX-BioB-5_st 40.0824 M 0.0464816
AFFX-BioB-M_st 28.9017 A 0.185131
AFFX-BioB-3_st 5.41102 A 0.737173
AFFX-BioC-5_st 3.78002 A 0.876428
AFFX-BioC-3_st 0.883673 A 0.960339
AFFX-BioDn-5_st 33.9434 A 0.175328
AFFX-BioDn-3_st 24.3011 P 0.00556451

Total number of rows: 8799

Table truncated, full table size 283 Kbytes.




Supplementary file Size Download File type/resource
GSM62766.CEL.gz 1.8 Mb (ftp)(http) CEL
GSM62766.EXP.gz 480 b (ftp)(http) EXP

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