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GEO accession:
Sample GSM62771
Query DataSets for GSM62771
Status
Public on May 22, 2007
Title
C7 _2 CTRL Kidney 7 days No. 42
Sample type
RNA
Source name
Kidney
Organism
Rattus norvegicus
Characteristics
CTRL Kidney 7 days
Treatment protocol
Extracted molecule
total RNA
Extraction protocol
Clonetech
Label
biotin
Label protocol
5 ug of cRNA was used to make biotinylated RNA
Hybridization protocol
standard Affymetrix procedure
Scan protocol
standard Affymetrix procedure
Description
C7 _2 CTRL Kidney 7 days
Data processing
Affymetrix Microarray Suite version 5.0 followed by GEA
Submission date
Jun 29, 2005
Last update date
May 22, 2007
Contact name
James Holzwarth
E-mail(s)
[email protected]
Phone
+41 21 785 8909
Organization name
Nestle Research Center
Department
Bioanalytical Sciences
Street address
vers chez les blanc
City
Lausanne
State/province
Vaud
ZIP/Postal code
1000
Country
Switzerland
Platform ID
GPL85
Series (2)
GSE2852
Ochratoxin A study on rat liver and kidney gene expression
GSE3304
Comparison of gene expression in conventional and germ-free intestine
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
1.99507
A
0.860518
AFFX-MurIL10_at
8.04964
A
0.425962
AFFX-MurIL4_at
1.69695
A
0.804734
AFFX-MurFAS_at
1.04485
A
0.834139
AFFX-BioB-5_at
66.925
P
0.0103167
AFFX-BioB-M_at
91.0288
P
6.02E-05
AFFX-BioB-3_at
58.1077
P
0.000509415
AFFX-BioC-5_at
156.141
P
0.00010954
AFFX-BioC-3_at
91.6689
P
0.000195116
AFFX-BioDn-5_at
116.968
P
0.00110197
AFFX-BioDn-3_at
667.444
P
8.14E-05
AFFX-CreX-5_at
1940.52
P
4.43E-05
AFFX-CreX-3_at
2914.68
P
4.43E-05
AFFX-BioB-5_st
11.2779
A
0.41138
AFFX-BioB-M_st
19.5051
A
0.139482
AFFX-BioB-3_st
2.88461
A
0.916408
AFFX-BioC-5_st
2.65466
A
0.883887
AFFX-BioC-3_st
1.20112
A
0.814869
AFFX-BioDn-5_st
8.529
A
0.300606
AFFX-BioDn-3_st
31.0236
A
0.0676785
Total number of rows:
8799
Table truncated, full table size
282 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM62771.CEL.gz
1.8 Mb
(ftp)
(http)
CEL
GSM62771.EXP.gz
478 b
(ftp)
(http)
EXP
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