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Sample GSM62775 Query DataSets for GSM62775
Status Public on May 22, 2007
Title T03 _ 29 OTA kidney 12 months No. 46
Sample type RNA
 
Source name Kidney
Organism Rattus norvegicus
Characteristics OTA kidney 12 months
Treatment protocol Male Fischer 344 rats were administered Ochratoxin A (OTA) through the diet over two years. The initial daily dietary intake was 300 mg OTA/kg bw, but was held at 100 mg/rat after animal reached 333 g.
Extracted molecule total RNA
Extraction protocol Clonetech
Label biotin
Label protocol 5 ug of cRNA was used to make biotinylated RNA
 
Hybridization protocol standard Affymetrix procedure
Scan protocol standard Affymetrix procedure
Description T03 _ 29 OTA kidney 12 months
Data processing Affymetrix Microarray Suite version 5.0 followed by GEA
 
Submission date Jun 29, 2005
Last update date May 22, 2007
Contact name James Holzwarth
E-mail(s) [email protected]
Phone +41 21 785 8909
Organization name Nestle Research Center
Department Bioanalytical Sciences
Street address vers chez les blanc
City Lausanne
State/province Vaud
ZIP/Postal code 1000
Country Switzerland
 
Platform ID GPL85
Series (2)
GSE2852 Ochratoxin A study on rat liver and kidney gene expression
GSE3304 Comparison of gene expression in conventional and germ-free intestine

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 2.0563 A 0.883887
AFFX-MurIL10_at 2.47261 A 0.645547
AFFX-MurIL4_at 0.440131 A 0.978107
AFFX-MurFAS_at 1.46851 A 0.659339
AFFX-BioB-5_at 43.7438 A 0.287743
AFFX-BioB-M_at 75.6704 P 0.00618711
AFFX-BioB-3_at 47.8461 P 0.0103167
AFFX-BioC-5_at 169.978 P 0.000169227
AFFX-BioC-3_at 93.7633 P 0.00687065
AFFX-BioDn-5_at 155.56 P 0.00179591
AFFX-BioDn-3_at 672.499 P 0.000340305
AFFX-CreX-5_at 753.867 P 4.43E-05
AFFX-CreX-3_at 1690.37 P 4.43E-05
AFFX-BioB-5_st 38.4671 A 0.131361
AFFX-BioB-M_st 43.3447 A 0.205732
AFFX-BioB-3_st 5.03892 A 0.891021
AFFX-BioC-5_st 3.96292 A 0.834139
AFFX-BioC-3_st 1.58639 A 0.883887
AFFX-BioDn-5_st 10.255 A 0.382599
AFFX-BioDn-3_st 25.9798 A 0.185131

Total number of rows: 8799

Table truncated, full table size 284 Kbytes.




Supplementary file Size Download File type/resource
GSM62775.CEL.gz 1.9 Mb (ftp)(http) CEL
GSM62775.EXP.gz 477 b (ftp)(http) EXP

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