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Sample GSM62783 Query DataSets for GSM62783
Status Public on May 22, 2007
Title T21_7 OTA kidney 21 days No. 54
Sample type RNA
 
Source name Kidney
Organism Rattus norvegicus
Characteristics OTA kidney 21 days
Treatment protocol Male Fischer 344 rats were administered Ochratoxin A (OTA) through the diet over two years. The initial daily dietary intake was 300 mg OTA/kg bw, but was held at 100 mg/rat after animal reached 333 g.
Extracted molecule total RNA
Extraction protocol Clonetech
Label biotin
Label protocol 5 ug of cRNA was used to make biotinylated RNA
 
Hybridization protocol standard Affymetrix procedure
Scan protocol standard Affymetrix procedure
Description T21_7 OTA kidney 21 days
Data processing Affymetrix Microarray Suite version 5.0 followed by GEA
 
Submission date Jun 29, 2005
Last update date May 22, 2007
Contact name James Holzwarth
E-mail(s) [email protected]
Phone +41 21 785 8909
Organization name Nestle Research Center
Department Bioanalytical Sciences
Street address vers chez les blanc
City Lausanne
State/province Vaud
ZIP/Postal code 1000
Country Switzerland
 
Platform ID GPL85
Series (2)
GSE2852 Ochratoxin A study on rat liver and kidney gene expression
GSE3304 Comparison of gene expression in conventional and germ-free intestine

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 3.45487 A 0.860518
AFFX-MurIL10_at 10.2124 A 0.5
AFFX-MurIL4_at 0.499946 A 0.984817
AFFX-MurFAS_at 2.11328 A 0.574038
AFFX-BioB-5_at 67.0557 A 0.0780018
AFFX-BioB-M_at 128.5 P 0.000856509
AFFX-BioB-3_at 81.2311 P 0.000972149
AFFX-BioC-5_at 196.259 P 0.000258358
AFFX-BioC-3_at 117.968 P 0.000662269
AFFX-BioDn-5_at 159.101 P 0.00159257
AFFX-BioDn-3_at 1073.29 P 0.000340305
AFFX-CreX-5_at 1864.59 P 4.43E-05
AFFX-CreX-3_at 2687.93 P 4.43E-05
AFFX-BioB-5_st 41.6366 A 0.102165
AFFX-BioB-M_st 29.1803 A 0.239063
AFFX-BioB-3_st 6.13671 A 0.824672
AFFX-BioC-5_st 4.12839 A 0.941556
AFFX-BioC-3_st 1.59446 A 0.904333
AFFX-BioDn-5_st 28.0015 A 0.262827
AFFX-BioDn-3_st 53.1343 A 0.0956669

Total number of rows: 8799

Table truncated, full table size 284 Kbytes.




Supplementary file Size Download File type/resource
GSM62783.CEL.gz 1.9 Mb (ftp)(http) CEL
GSM62783.EXP.gz 480 b (ftp)(http) EXP

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