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GEO accession:
Sample GSM62785
Query DataSets for GSM62785
Status
Public on May 22, 2007
Title
C9 ctrl liver 7 months No. 56
Sample type
RNA
Source name
Liver
Organism
Rattus norvegicus
Characteristics
ctrl liver 7 months
Treatment protocol
Extracted molecule
total RNA
Extraction protocol
Clonetech
Label
biotin
Label protocol
5 ug of cRNA was used to make biotinylated RNA
Hybridization protocol
standard Affymetrix procedure
Scan protocol
standard Affymetrix procedure
Description
C9 ctrl liver 7 months
Data processing
Affymetrix Microarray Suite version 5.0 followed by GEA
Submission date
Jun 29, 2005
Last update date
May 22, 2007
Contact name
James Holzwarth
E-mail(s)
[email protected]
Phone
+41 21 785 8909
Organization name
Nestle Research Center
Department
Bioanalytical Sciences
Street address
vers chez les blanc
City
Lausanne
State/province
Vaud
ZIP/Postal code
1000
Country
Switzerland
Platform ID
GPL85
Series (2)
GSE2852
Ochratoxin A study on rat liver and kidney gene expression
GSE3304
Comparison of gene expression in conventional and germ-free intestine
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
2.67802
A
0.876428
AFFX-MurIL10_at
3.92917
A
0.659339
AFFX-MurIL4_at
0.531379
A
0.999742
AFFX-MurFAS_at
1.88174
A
0.749204
AFFX-BioB-5_at
39.7748
A
0.239063
AFFX-BioB-M_at
109.829
P
0.0012475
AFFX-BioB-3_at
63.261
P
0.002867
AFFX-BioC-5_at
203.929
P
0.000258358
AFFX-BioC-3_at
123.795
P
0.00359458
AFFX-BioDn-5_at
165.289
P
0.0020226
AFFX-BioDn-3_at
1001.44
P
0.000972149
AFFX-CreX-5_at
1834.2
P
4.43E-05
AFFX-CreX-3_at
3106.44
P
4.43E-05
AFFX-BioB-5_st
31.4734
A
0.156732
AFFX-BioB-M_st
34.3332
A
0.313723
AFFX-BioB-3_st
3.93057
A
0.916408
AFFX-BioC-5_st
7.13553
A
0.824672
AFFX-BioC-3_st
1.27142
A
0.941556
AFFX-BioDn-5_st
35.4616
A
0.313723
AFFX-BioDn-3_st
36.932
A
0.083592
Total number of rows:
8799
Table truncated, full table size
282 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM62785.CEL.gz
1.9 Mb
(ftp)
(http)
CEL
GSM62785.EXP.gz
480 b
(ftp)
(http)
EXP
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