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Sample GSM62786 Query DataSets for GSM62786
Status Public on May 22, 2007
Title T16 OTA liver 7 months No. 57
Sample type RNA
 
Source name Liver
Organism Rattus norvegicus
Characteristics OTA liver 7 months
Treatment protocol Male Fischer 344 rats were administered Ochratoxin A (OTA) through the diet over two years. The initial daily dietary intake was 300 mg OTA/kg bw, but was held at 100 mg/rat after animal reached 333 g.
Extracted molecule total RNA
Extraction protocol Clonetech
Label biotin
Label protocol 5 ug of cRNA was used to make biotinylated RNA
 
Hybridization protocol standard Affymetrix procedure
Scan protocol standard Affymetrix procedure
Description T16 OTA liver 7 months
Data processing Affymetrix Microarray Suite version 5.0 followed by GEA
 
Submission date Jun 29, 2005
Last update date May 22, 2007
Contact name James Holzwarth
E-mail(s) [email protected]
Phone +41 21 785 8909
Organization name Nestle Research Center
Department Bioanalytical Sciences
Street address vers chez les blanc
City Lausanne
State/province Vaud
ZIP/Postal code 1000
Country Switzerland
 
Platform ID GPL85
Series (2)
GSE2852 Ochratoxin A study on rat liver and kidney gene expression
GSE3304 Comparison of gene expression in conventional and germ-free intestine

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 2.84652 A 0.916408
AFFX-MurIL10_at 2.83061 A 0.686277
AFFX-MurIL4_at 0.576478 A 0.99859
AFFX-MurFAS_at 1.16039 A 0.814869
AFFX-BioB-5_at 51.7874 A 0.175328
AFFX-BioB-M_at 163.838 P 0.000662269
AFFX-BioB-3_at 96.8887 P 0.00227496
AFFX-BioC-5_at 223.911 P 0.000169227
AFFX-BioC-3_at 135.423 P 0.000856509
AFFX-BioDn-5_at 198.094 P 0.00159257
AFFX-BioDn-3_at 1222.03 P 0.000258358
AFFX-CreX-5_at 2475.37 P 4.43E-05
AFFX-CreX-3_at 3630.05 P 4.43E-05
AFFX-BioB-5_st 31.3885 A 0.123572
AFFX-BioB-M_st 22.1002 A 0.327079
AFFX-BioB-3_st 6.24389 A 0.783476
AFFX-BioC-5_st 3.75957 A 0.932322
AFFX-BioC-3_st 1.21633 A 0.937071
AFFX-BioDn-5_st 36.0964 A 0.195266
AFFX-BioDn-3_st 36.6196 M 0.0584438

Total number of rows: 8799

Table truncated, full table size 283 Kbytes.




Supplementary file Size Download File type/resource
GSM62786.CEL.gz 1.9 Mb (ftp)(http) CEL
GSM62786.EXP.gz 480 b (ftp)(http) EXP

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