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Sample GSM62787 Query DataSets for GSM62787
Status Public on May 22, 2007
Title T17 OTA liver 7 months No. 58
Sample type RNA
 
Source name Liver
Organism Rattus norvegicus
Characteristics OTA liver 7 months
Treatment protocol Male Fischer 344 rats were administered Ochratoxin A (OTA) through the diet over two years. The initial daily dietary intake was 300 mg OTA/kg bw, but was held at 100 mg/rat after animal reached 333 g.
Extracted molecule total RNA
Extraction protocol Clonetech
Label biotin
Label protocol 5 ug of cRNA was used to make biotinylated RNA
 
Hybridization protocol standard Affymetrix procedure
Scan protocol standard Affymetrix procedure
Description T17 OTA liver 7 months
Data processing Affymetrix Microarray Suite version 5.0 followed by GEA
 
Submission date Jun 29, 2005
Last update date May 22, 2007
Contact name James Holzwarth
E-mail(s) [email protected]
Phone +41 21 785 8909
Organization name Nestle Research Center
Department Bioanalytical Sciences
Street address vers chez les blanc
City Lausanne
State/province Vaud
ZIP/Postal code 1000
Country Switzerland
 
Platform ID GPL85
Series (2)
GSE2852 Ochratoxin A study on rat liver and kidney gene expression
GSE3304 Comparison of gene expression in conventional and germ-free intestine

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 1.82222 A 0.860518
AFFX-MurIL10_at 2.56244 A 0.737173
AFFX-MurIL4_at 0.429751 A 0.996788
AFFX-MurFAS_at 4.16561 A 0.659339
AFFX-BioB-5_at 9.51403 A 0.60308
AFFX-BioB-M_at 90.4674 P 0.00179591
AFFX-BioB-3_at 45.7101 P 0.0182806
AFFX-BioC-5_at 151.574 P 0.000296708
AFFX-BioC-3_at 90.5506 P 0.0032123
AFFX-BioDn-5_at 105.851 P 0.00401721
AFFX-BioDn-3_at 716.52 P 0.000389797
AFFX-CreX-5_at 1284.81 P 4.43E-05
AFFX-CreX-3_at 2194.72 P 4.43E-05
AFFX-BioB-5_st 21.7902 A 0.239063
AFFX-BioB-M_st 7.88409 A 0.617401
AFFX-BioB-3_st 4.65223 A 0.860518
AFFX-BioC-5_st 4.47117 A 0.949771
AFFX-BioC-3_st 1.61871 A 0.916408
AFFX-BioDn-5_st 33.3538 A 0.0726999
AFFX-BioDn-3_st 22.5951 A 0.131361

Total number of rows: 8799

Table truncated, full table size 282 Kbytes.




Supplementary file Size Download File type/resource
GSM62787.CEL.gz 1.9 Mb (ftp)(http) CEL
GSM62787.EXP.gz 496 b (ftp)(http) EXP

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