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Sample GSM62795 Query DataSets for GSM62795
Status Public on May 22, 2007
Title T7_7 OTA liver 7 days No. 66
Sample type RNA
 
Source name Liver
Organism Rattus norvegicus
Characteristics OTA liver 7 days
Treatment protocol Male Fischer 344 rats were administered Ochratoxin A (OTA) through the diet over two years. The initial daily dietary intake was 300 mg OTA/kg bw, but was held at 100 mg/rat after animal reached 333 g.
Extracted molecule total RNA
Extraction protocol Clonetech
Label biotin
Label protocol 5 ug of cRNA was used to make biotinylated RNA
 
Hybridization protocol standard Affymetrix procedure
Scan protocol standard Affymetrix procedure
Description T7_7 OTA liver 7 days
Data processing Affymetrix Microarray Suite version 5.0 followed by GEA
 
Submission date Jun 29, 2005
Last update date May 22, 2007
Contact name James Holzwarth
E-mail(s) [email protected]
Phone +41 21 785 8909
Organization name Nestle Research Center
Department Bioanalytical Sciences
Street address vers chez les blanc
City Lausanne
State/province Vaud
ZIP/Postal code 1000
Country Switzerland
 
Platform ID GPL85
Series (2)
GSE2852 Ochratoxin A study on rat liver and kidney gene expression
GSE3304 Comparison of gene expression in conventional and germ-free intestine

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 1.98265 A 0.910522
AFFX-MurIL10_at 2.02701 A 0.672921
AFFX-MurIL4_at 0.626085 A 0.969024
AFFX-MurFAS_at 0.918579 A 0.737173
AFFX-BioB-5_at 51.2825 M 0.0584438
AFFX-BioB-M_at 104.728 P 0.000509415
AFFX-BioB-3_at 66.2641 P 0.000445901
AFFX-BioC-5_at 175.258 P 0.000195116
AFFX-BioC-3_at 86.5722 P 7.01E-05
AFFX-BioDn-5_at 95.7531 P 0.00159257
AFFX-BioDn-3_at 386.079 P 0.000258358
AFFX-CreX-5_at 741.339 P 4.43E-05
AFFX-CreX-3_at 1092.69 P 4.43E-05
AFFX-BioB-5_st 16.3377 A 0.139482
AFFX-BioB-M_st 16.1694 A 0.368438
AFFX-BioB-3_st 3.75252 A 0.860518
AFFX-BioC-5_st 2.63843 A 0.910522
AFFX-BioC-3_st 1.7033 A 0.860518
AFFX-BioDn-5_st 34.6765 A 0.205732
AFFX-BioDn-3_st 30.7749 A 0.123572

Total number of rows: 8799

Table truncated, full table size 282 Kbytes.




Supplementary file Size Download File type/resource
GSM62795.CEL.gz 1.8 Mb (ftp)(http) CEL
GSM62795.EXP.gz 441 b (ftp)(http) EXP

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