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Sample GSM62861 Query DataSets for GSM62861
Status Public on Aug 23, 2005
Title ciprofibrate at 3 mg/kg/day for 15 days biological replicate 3
Sample type RNA
 
Source name animal 63
Organism Macaca fascicularis
Characteristics male liver
Extracted molecule total RNA
Extraction protocol Approximately 3 grams from the right lateral liver lobe was flash-frozen in liquid nitrogen. Total RNA isolated using TRIzol.
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description liver from animal 63, treated with 3 mg/kg/day ciprofibrate for 15 days
Data processing Affymetrix Microarray Suite version 5.0 given here for convenience. Note that data processing reported in the Toxicological Sciences manuscript was done using Rosetta Resolver and the Rosetta Resolver treated versus control group fold-change and p-value are appended to Series entry.
 
Submission date Jun 30, 2005
Last update date Mar 16, 2009
Contact name Neal F Cariello
E-mail(s) [email protected]
Phone 919 971 5307
Organization name GlaxoSmithKline
Department Safety Assessment
Lab Investigative Toxicology and Pathology
Street address 5 Moore Drive, Bldg 9, Rom 2011
City Research Triangle Park
State/province NC
ZIP/Postal code 27713
Country USA
 
Platform ID GPL8300
Series (1)
GSE2853 Ciprofibrate (PPAR-alpha agonist) in the monkey liver

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
34639_at 17.5 A 0.910595
40662_g_at 14.4 A 0.397994
1359_at 68.2 A 0.397994
38244_at 11.5 A 0.250724
38929_at 11 A 0.872355
32522_f_at 33.3 A 0.697453
34242_at 46.2 A 0.602006
38784_g_at 367.4 A 0.250724
40603_at 29.4 A 0.541184
35356_at 104.4 M 0.05447
33511_at 102.7 M 0.05447
39703_at 49.6 A 0.127645
36850_at 60.3 A 0.5
35359_at 735.5 P 0.00418
36119_at 29 A 0.47938
387_at 186.2 A 0.175989
31514_at 230.2 A 0.32083
794_at 103.3 A 0.234557
34984_at 1.5 A 0.995825
708_at 26.8 A 0.872355

Total number of rows: 12625

Table truncated, full table size 309 Kbytes.




Supplementary file Size Download File type/resource
GSM62861.CEL.gz 2.8 Mb (ftp)(http) CEL

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