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Sample GSM62873 Query DataSets for GSM62873
Status Public on Aug 23, 2005
Title ciprofibrate at 400 mg/kg/day for 15 days biological replicate 3
Sample type RNA
 
Source name animal 23
Organism Macaca fascicularis
Characteristics male liver
Extracted molecule total RNA
Extraction protocol Approximately 3 grams from the right lateral liver lobe was flash-frozen in liquid nitrogen. Total RNA isolated using TRIzol.
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description liver from animal 23, treated with 400 mg/kg/day ciprofibrate for 15 days
Data processing Affymetrix Microarray Suite version 5.0 given here for convenience. Note that data processing reported in the Toxicological Sciences manuscript was done using Rosetta Resolver and the Rosetta Resolver treated versus control group fold-change and p-value are appended to Series entry.
 
Submission date Jun 30, 2005
Last update date Mar 16, 2009
Contact name Neal F Cariello
E-mail(s) [email protected]
Phone 919 971 5307
Organization name GlaxoSmithKline
Department Safety Assessment
Lab Investigative Toxicology and Pathology
Street address 5 Moore Drive, Bldg 9, Rom 2011
City Research Triangle Park
State/province NC
ZIP/Postal code 27713
Country USA
 
Platform ID GPL8300
Series (1)
GSE2853 Ciprofibrate (PPAR-alpha agonist) in the monkey liver

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
34639_at 33 A 0.715253
40662_g_at 20.4 A 0.378184
1359_at 7.7 A 0.837065
38244_at 2.5 A 0.749312
38929_at 6.9 A 0.824011
32522_f_at 25.5 A 0.697453
34242_at 19.2 A 0.621816
38784_g_at 44.2 A 0.52062
40603_at 56.4 A 0.35869
35356_at 76.1 A 0.138765
33511_at 39.9 A 0.397994
39703_at 48.3 A 0.066865
36850_at 9.6 A 0.715253
35359_at 653.7 P 0.007543
36119_at 40.3 A 0.066865
387_at 182.9 A 0.218983
31514_at 50.6 A 0.438361
794_at 104.4 A 0.250724
34984_at 1.9 A 0.988553
708_at 1.3 A 0.978134

Total number of rows: 12625

Table truncated, full table size 308 Kbytes.




Supplementary file Size Download File type/resource
GSM62873.CEL.gz 2.8 Mb (ftp)(http) CEL

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