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Sample GSM64859 Query DataSets for GSM64859
Status Public on Apr 11, 2006
Title Treatment: DHT; time: 24 hrs; repeat: 2
Sample type RNA
 
Source name LNCaP cells
Organism Homo sapiens
Characteristics LNCaP cells; Human, prostate carcinoma, metastasized to lymph node; Maintained in DMEM/8% charcoal-stripped serum for 3 days before treatment.
Treatment protocol In this experiment LNCaP cells
were treated with Vehicle (ethanol),
DHT (10 nM) or RTI-6413-018 (100 nM).
Treatment was done for 6 and 24 hrs.
The entire experiment was repeated 3 times.
Extracted molecule polyA RNA
Label biotin
 
Description A study of the SARM-regulated gene expression in LNCaP prostate carcinoma cells.
Treated with DHT for 24 hrs.
Data processing Standard Affymetrix scanning/normalization process
 
Submission date Jul 19, 2005
Last update date Apr 10, 2006
Contact name Dmitri A Kazmin
E-mail(s) [email protected]
Organization name Stanford University
Department Institute for Immunity, Transplantation and Infection
Lab Bali Pulendran
Street address 240 Pasteur Dr
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Platform ID GPL96
Series (1)
GSE4636 Differential redulation of gene expression by an RTI SARM and canonical agonist of androgen receptor

Data table header descriptions
ID_REF
0068_1714_H133A_T24.2_Stat Pairs Probe pairs available (PM/MM)
0068_1714_H133A_T24.2_Stat Pairs Used Probe pairs used (PM/MM)
VALUE Absolute measured signal
ABS_CALL Present/absent call
DETECTION P-VALUE P-value for the P/A call

Data table
ID_REF 0068_1714_H133A_T24.2_Stat Pairs 0068_1714_H133A_T24.2_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 322.2 P 0.001248
AFFX-BioB-M_at 20 20 545.3 P 0.000095
AFFX-BioB-3_at 20 20 395.5 P 0.00011
AFFX-BioC-5_at 20 20 899.4 P 0.000095
AFFX-BioC-3_at 20 20 659.4 P 0.00011
AFFX-BioDn-5_at 20 20 919.6 P 0.00007
AFFX-BioDn-3_at 20 20 5352.6 P 0.000081
AFFX-CreX-5_at 20 20 8164.9 P 0.000044
AFFX-CreX-3_at 20 20 13133 P 0.000044
AFFX-DapX-5_at 20 20 6.2 A 0.712257
AFFX-DapX-M_at 20 20 44.7 A 0.275146
AFFX-DapX-3_at 20 20 5.6 A 0.98333
AFFX-LysX-5_at 20 20 13.7 A 0.544588
AFFX-LysX-M_at 20 20 40.2 A 0.382599
AFFX-LysX-3_at 20 20 2.8 A 0.904333
AFFX-PheX-5_at 20 20 1.9 A 0.979978
AFFX-PheX-M_at 20 20 5.4 A 0.883887
AFFX-PheX-3_at 20 20 18.3 A 0.672921
AFFX-ThrX-5_at 20 20 7.9 A 0.804734
AFFX-ThrX-M_at 20 20 5.1 A 0.659339

Total number of rows: 22283

Table truncated, full table size 723 Kbytes.




Supplementary file Size Download File type/resource
GSM64859.CEL.gz 3.5 Mb (ftp)(http) CEL

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