NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM64864 Query DataSets for GSM64864
Status Public on Apr 11, 2006
Title Treatment: vehicle; time 24 hrs; repeat: 3
Sample type RNA
 
Source name LNCaP cells
Organism Homo sapiens
Characteristics LNCaP cells; Human, prostate carcinoma, metastasized to lymph node; Maintained in DMEM/8% charcoal-stripped serum for 3 days before treatment.
Treatment protocol In this experiment LNCaP cells
were treated with Vehicle (ethanol),
DHT (10 nM) or RTI-6413-018 (100 nM).
Treatment was done for 6 and 24 hrs.
The entire experiment was repeated 3 times.
Extracted molecule polyA RNA
Label biotin
 
Description A study of the SARM-regulated gene expression in LNCaP prostate carcinoma cells.
Treated with vehicle for 24 hrs
Data processing Standard Affymetrix scanning/normalization process
 
Submission date Jul 19, 2005
Last update date Apr 10, 2006
Contact name Dmitri A Kazmin
E-mail(s) [email protected]
Organization name Stanford University
Department Institute for Immunity, Transplantation and Infection
Lab Bali Pulendran
Street address 240 Pasteur Dr
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Platform ID GPL96
Series (1)
GSE4636 Differential redulation of gene expression by an RTI SARM and canonical agonist of androgen receptor

Data table header descriptions
ID_REF
0068_1718_H133A_V24.3_Stat Pairs Probe pairs available (PM/MM)
0068_1718_H133A_V24.3_Stat Pairs Used Probe pairs used (PM/MM)
VALUE Absolute measured signal
ABS_CALL Present/absent call
DETECTION P-VALUE P-value for the P/A call

Data table
ID_REF 0068_1718_H133A_V24.3_Stat Pairs 0068_1718_H133A_V24.3_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 337.8 P 0.000754
AFFX-BioB-M_at 20 20 811.2 P 0.00007
AFFX-BioB-3_at 20 20 455.1 P 0.000095
AFFX-BioC-5_at 20 20 858 P 0.00011
AFFX-BioC-3_at 20 20 803.5 P 0.00007
AFFX-BioDn-5_at 20 20 1214.9 P 0.000052
AFFX-BioDn-3_at 20 20 5356.1 P 0.00006
AFFX-CreX-5_at 20 20 8324.6 P 0.000044
AFFX-CreX-3_at 20 20 12600.2 P 0.000044
AFFX-DapX-5_at 20 20 10.9 A 0.48511
AFFX-DapX-M_at 20 20 20.1 A 0.48511
AFFX-DapX-3_at 20 20 3.6 A 0.949771
AFFX-LysX-5_at 20 20 20.9 A 0.382599
AFFX-LysX-M_at 20 20 22.3 A 0.470241
AFFX-LysX-3_at 20 20 21.2 A 0.39692
AFFX-PheX-5_at 20 20 1.1 A 0.999703
AFFX-PheX-M_at 20 20 0.8 A 0.978098
AFFX-PheX-3_at 20 20 15.8 A 0.672921
AFFX-ThrX-5_at 20 20 4.5 A 0.724854
AFFX-ThrX-M_at 20 20 5.1 A 0.749204

Total number of rows: 22283

Table truncated, full table size 722 Kbytes.




Supplementary file Size Download File type/resource
GSM64864.CEL.gz 3.4 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap