|
| Status |
Public on Nov 09, 2022 |
| Title |
WT_wo_myelin C_K9_18_3_S61887 |
| Sample type |
SRA |
| |
|
| Source name |
Blood
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Blood
cell line: Healthy_macrophages
cell type: Macrophages
genotype: Control
treatment: no treatment
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was harvested using RNeasy mini kit (Qiagen).
RNA libraries for RNA-seq were prepared using poly-A selection.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
WT_wo_myelin
|
| Data processing |
STAR
Mapping was done using STAR to hg38 genome.
Assembly: hg38
Supplementary files format and content: Tab-delimited text files include raw count values for each sample.
|
| |
|
| Submission date |
Nov 02, 2022 |
| Last update date |
Nov 09, 2022 |
| Contact name |
Jure Fabjan |
| E-mail(s) |
[email protected]
|
| Organization name |
Medical University of Vienna
|
| Department |
Department of Pathobiology of the Nervous System
|
| Street address |
Spitalgasse 4
|
| City |
Vienna |
| ZIP/Postal code |
1090 |
| Country |
Austria |
| |
|
| Platform ID |
GPL11154 |
| Series (2) |
| GSE217140 |
Transcriptome of human primary macrophages from X-linked adrenoleukodystrophy patients and healthy controls |
| GSE245235 |
Transcriptome of human primary macrophages from X-linked adrenoleukodystrophy patients and healthy controls before and after long-term myelin phagocytosis |
|
| Relations |
| BioSample |
SAMN31577028 |
| SRA |
SRX18127689 |
