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Sample GSM6807242 Query DataSets for GSM6807242
Status Public on Dec 09, 2022
Title KAT7 mutant rep 3
Sample type SRA
 
Source name Brain
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: Brain
cell type: Cortical neurons
genotype: KAT7 mutant
age: E16.5
Sex: male
Extracted molecule polyA RNA
Extraction protocol Total RNA was isolated using Qiagen RNeasy kit (Qiagen, 74104) according to the manufacturer's instructions
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer IIx
 
Description 8.Mutant
Data processing Reads (49bp) were aligned to the mouse genome mm9 using the Rsubread package v1.4.0
Read counts were summarised at the gene level using the featureCounts function in Rsubread V1.4.0 using the in-built RefSeq annotation
Assembly: mm9
Supplementary files format and content: tab delimited text file with entrez gene id and gene length ain the first two columns, followed by 7 columns containing counts for each sample
 
Submission date Dec 09, 2022
Last update date Dec 09, 2022
Contact name Belinda Phipson
Organization name WEHI
Department Bioinformatics
Lab Phipson
Street address 1G Royal Parade
City Parkville
State/province VIC
ZIP/Postal code 3052
Country Australia
 
Platform ID GPL11002
Series (1)
GSE220602 Stem cell plasticity, acetylation of H3K14 and de novo gene activation rely on KAT7
Relations
BioSample SAMN32127770
SRA SRX18550185

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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