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Sample GSM69788 Query DataSets for GSM69788
Status Public on Dec 01, 2005
Title CH1811
Sample type RNA
 
Source name Neurointermediate lobe _control
Organism Rattus norvegicus
Characteristics Strain: Sprague Dawley
Gender: Male
Age: 10-12 weeks
Tissue: Neurointermediate lobe of the Pituitary
Extracted molecule total RNA
Extraction protocol Tissue was dissected in an RNase free manner and stored in RNAlater (Ambion) at -20C for no more than 1 month. Homogenisation in QIAzol was conducted mechanically and the aqueous phase separated using a PLG column (Eppendorf). RNA was further purified using RNeasy minelute cleanup kit (Qiagen). RNA quality was confirmed using nanodrop and bioanylizer 2100 (Agilent).
Label MessageAmpII aRNA Amplification kit (Ambion)
Label protocol Protocol available at http://www.AMBION.com/catalog/CatNum.php?1753
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Description Sample represents the Neurointermediate lobe of the Pituitary from 5 control animals
Data processing GCOS version 1.2
 
Submission date Aug 13, 2005
Last update date Sep 27, 2007
Contact name DAVID MURPHY
Organization name University of Bristol
Department Medicine and Dentistry
Lab Laboratories for Integrative Neuroscience and Endocrinolgy
Street address Whitson Street
City Bristol
State/province AVON
ZIP/Postal code BS1 3NY
Country United Kingdom
 
Platform ID GPL1355
Series (3)
GSE3125 Comprehensive description of the transcriptome of neurointermediate lobe in euhydrated and dehydrated rat
GSE4130 The transcriptome of the hypothalamoneurohypophyseal system in euhydrated and dehydrated rats
GSE8491 The Transcriptome of the rat hypothalamo-neurohypophyseal system is highly strain-dependant

Data table header descriptions
ID_REF
VALUE GCOS calculated signal intensity
ABS_CALL Indication of the transcript being present (P), absent (A), marginal (M)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 80.1 P
AFFX-BioB-M_at 158.6 P
AFFX-BioB-3_at 83.4 P
AFFX-BioC-5_at 249.2 P
AFFX-BioC-3_at 266.2 P
AFFX-BioDn-5_at 501.6 P
AFFX-BioDn-3_at 1482.2 P
AFFX-CreX-5_at 2690.8 P
AFFX-CreX-3_at 3397.5 P
AFFX-DapX-5_at 4.7 A
AFFX-DapX-M_at 0.8 A
AFFX-DapX-3_at 0.3 A
AFFX-LysX-5_at 0.5 A
AFFX-LysX-M_at 1 A
AFFX-LysX-3_at 3.2 A
AFFX-PheX-5_at 0.8 A
AFFX-PheX-M_at 0.1 A
AFFX-PheX-3_at 7 A
AFFX-ThrX-5_at 0.8 A
AFFX-ThrX-M_at 0.7 A

Total number of rows: 31099

Table truncated, full table size 546 Kbytes.




Supplementary data files not provided

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