NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM733937 Query DataSets for GSM733937
Status Public on May 30, 2011
Title Secondary MMTV-Neu Tumor WT593
Sample type RNA
 
Source name Mouse Mammary Tumor
Organism Mus musculus
Characteristics strain: FvB
size: Mammary Tumor less than 1.0 cm diameter
tissue: Secondary MMTV-Neu Mammary Tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol reagent. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Gene expression data from secondary MMTV-Neu tumor generated with a single TIC
Data processing The data were normalised using quantile normalization with BeadStudio
 
Submission date May 29, 2011
Last update date May 30, 2011
Contact name Jeff Liu
E-mail(s) [email protected]
Phone 416-340-4800
Organization name University Health Network
Department Princess Margaret Cancer Center
Lab Zadeh Lab
Street address 101 College Street, RM 4-601
City Toronto
State/province Ontario
ZIP/Postal code M5G 1L7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE29616 Gene expression of primary MMTV-Neu tumors compared to secondary tumors generated from lin- and single tumor initiating cell (TIC) transplantation

Data table header descriptions
ID_REF
VALUE quantile normalized
WT593 Detection Pval

Data table
ID_REF VALUE WT593 Detection Pval
ILMN_2896528 11638.34 0
ILMN_2721178 3181.075 0
ILMN_3033922 3196.944 0
ILMN_3092673 9754.038 0
ILMN_2816356 175.9876 0.006265664
ILMN_2808939 1255.639 0
ILMN_2634564 1120.58 0
ILMN_2737647 144.6717 0.08145364
ILMN_2734484 1460.674 0
ILMN_2952292 444.7672 0
ILMN_2699078 116.4076 0.4912281
ILMN_1213681 522.6286 0
ILMN_2735413 132.6233 0.1591479
ILMN_2735415 132.1971 0.1666667
ILMN_2891688 1048.619 0
ILMN_2637698 1533.511 0
ILMN_2674228 429.9056 0
ILMN_2601546 131.2578 0.1741855
ILMN_1230831 121.6375 0.3533835
ILMN_2848071 170.8719 0.01253133

Total number of rows: 25697

Table truncated, full table size 718 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap