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GEO accession:
Sample GSM738911
Query DataSets for GSM738911
Status
Public on Jun 09, 2011
Title
Control-pxt^EY03052-S14-Rep1
Sample type
RNA
Source name
stage14 follicle
Organism
Drosophila melanogaster
Characteristics
developmental stage: 14
tissue: follicle
gender: female
genotype: pxt^EY03052
Treatment protocol
Follicles of the stages and genotypes indicated were dissected in Grace's media.
Growth protocol
2-4 day old female flies were fed wet yeast for at least 36 hours prior to follicle dissections.
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
biotin
Label protocol
Performed by Johns Hopkins Microarray Faciltiy - 10ug RNA used to generate probe, no amplification
Hybridization protocol
Performed by Johns Hopkins Microarray Faciltiy - affymetrix Drosohila Genechip 2.0
Scan protocol
Performed by Johns Hopkins Microarray Faciltiy
Data processing
MAS5 data processing
Submission date
Jun 08, 2011
Last update date
Aug 28, 2018
Contact name
Tina Tootle
E-mail(s)
[email protected]
URL
http://www.anatomy.uiowa.edu/personnel.shtml?id=ttootle
Organization name
University of Iowa
Department
Anatomy and Cell Biology
Lab
Tootle Lab
Street address
51 Newton Rd, 1-500BSB
City
Iowa City
State/province
IA
ZIP/Postal code
52242
Country
USA
Platform ID
GPL1322
Series (1)
GSE29815
Drosophila Staged follicles
Relations
Reanalyzed by
GSE119084
Data table header descriptions
ID_REF
VALUE
Signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
965.283
P
4.42873e-05
AFFX-BioB-M_at
1579.04
P
4.42873e-05
AFFX-BioB-3_at
980.505
P
4.42873e-05
AFFX-BioC-5_at
2354.8
P
6.02111e-05
AFFX-BioC-3_at
2140.61
P
4.42873e-05
AFFX-BioDn-5_at
3273.33
P
4.42873e-05
AFFX-BioDn-3_at
8789.99
P
5.16732e-05
AFFX-CreX-5_at
26324.5
P
5.16732e-05
AFFX-CreX-3_at
27354.9
P
4.42873e-05
AFFX-DapX-5_at
5.05948
A
0.559354
AFFX-DapX-M_at
12.4592
A
0.425962
AFFX-DapX-3_at
3.63292
A
0.737191
AFFX-LysX-5_at
5.41906
A
0.559354
AFFX-LysX-M_at
4.6883
A
0.876428
AFFX-LysX-3_at
26.516
P
0.0125468
AFFX-PheX-5_at
1.37236
A
0.973889
AFFX-PheX-M_at
6.27019
A
0.794268
AFFX-PheX-3_at
38.1653
A
0.205732
AFFX-ThrX-5_at
4.11663
A
0.804754
AFFX-ThrX-M_at
3.07313
A
0.737173
Total number of rows:
18952
Table truncated, full table size
575 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM738911.CEL.gz
1.8 Mb
(ftp)
(http)
CEL
GSM738911.CHP.gz
109.3 Kb
(ftp)
(http)
CHP
Processed data provided as supplementary file
Processed data included within Sample table
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