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GEO accession:
Sample GSM74303
Query DataSets for GSM74303
Status
Public on May 19, 2008
Title
740_Ileum2_Conv
Sample type
RNA
Source name
740_Ileum2_Conv
Organism
Mus musculus
Characteristics
Strain:C3H Tissue: Ileum
Extracted molecule
total RNA
Extraction protocol
TriPure Roche + Column purification
Label
biotin
Label protocol
5 ug of cRNA was used to make biotinylated RNA
Hybridization protocol
standard Affymetrix procedure
Scan protocol
standard Affymetrix procedure
Description
740_Ileum2_Conv
Data processing
Robust Multiarray Analysis followed by GEA
Submission date
Sep 14, 2005
Last update date
May 21, 2007
Contact name
James Holzwarth
E-mail(s)
[email protected]
Phone
+41 21 785 8909
Organization name
Nestle Research Center
Department
Bioanalytical Sciences
Street address
vers chez les blanc
City
Lausanne
State/province
Vaud
ZIP/Postal code
1000
Country
Switzerland
Platform ID
GPL81
Series (1)
GSE3304
Comparison of gene expression in conventional and germ-free intestine
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
2.96747
A
0.749204
AFFX-MurIL10_at
6.60185
A
0.52976
AFFX-MurIL4_at
4.16057
A
0.544587
AFFX-MurFAS_at
29.6077
P
0.0103167
AFFX-BioB-5_at
47.5079
P
0.00227496
AFFX-BioB-M_at
111.666
P
5.17E-05
AFFX-BioB-3_at
77.7893
P
7.01E-05
AFFX-BioC-5_at
153.758
P
9.45E-05
AFFX-BioC-3_at
112.55
P
4.43E-05
AFFX-BioDn-5_at
157.838
P
4.43E-05
AFFX-BioDn-3_at
709.197
P
0.00010954
AFFX-CreX-5_at
1424.86
P
4.43E-05
AFFX-CreX-3_at
2690.65
P
4.43E-05
AFFX-BioB-5_st
14.0755
A
0.227636
AFFX-BioB-M_st
11.6544
A
0.327079
AFFX-BioB-3_st
16.9976
A
0.659339
AFFX-BioC-5_st
1.65065
A
0.883887
AFFX-BioC-3_st
3.53185
A
0.5
AFFX-BioDn-5_st
29.7722
A
0.116113
AFFX-BioDn-3_st
24.6353
A
0.131361
Total number of rows:
12488
Table truncated, full table size
362 Kbytes
.
Supplementary data files not provided
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