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GEO accession:
Sample GSM74305
Query DataSets for GSM74305
Status
Public on May 19, 2008
Title
744_Colon3_Conv
Sample type
RNA
Source name
744_Colon3_Conv
Organism
Mus musculus
Characteristics
Strain:C3H Tissue: Colon
Extracted molecule
total RNA
Extraction protocol
TriPure Roche + Column purification
Label
biotin
Label protocol
5 ug of cRNA was used to make biotinylated RNA
Hybridization protocol
standard Affymetrix procedure
Scan protocol
standard Affymetrix procedure
Description
744_Colon3_Conv
Data processing
Robust Multiarray Analysis followed by GEA
Submission date
Sep 14, 2005
Last update date
May 21, 2007
Contact name
James Holzwarth
E-mail(s)
[email protected]
Phone
+41 21 785 8909
Organization name
Nestle Research Center
Department
Bioanalytical Sciences
Street address
vers chez les blanc
City
Lausanne
State/province
Vaud
ZIP/Postal code
1000
Country
Switzerland
Platform ID
GPL81
Series (1)
GSE3304
Comparison of gene expression in conventional and germ-free intestine
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
2.26258
A
0.966323
AFFX-MurIL10_at
4.6525
A
0.631562
AFFX-MurIL4_at
6.92973
A
0.102165
AFFX-MurFAS_at
15.9828
A
0.205732
AFFX-BioB-5_at
57.1798
P
0.00933744
AFFX-BioB-M_at
122.271
P
0.00010954
AFFX-BioB-3_at
66.6847
P
8.14E-05
AFFX-BioC-5_at
152.204
P
0.000146581
AFFX-BioC-3_at
135.714
P
7.01E-05
AFFX-BioDn-5_at
137.558
P
4.43E-05
AFFX-BioDn-3_at
777.568
P
9.45E-05
AFFX-CreX-5_at
1342.43
P
4.43E-05
AFFX-CreX-3_at
2532.38
P
4.43E-05
AFFX-BioB-5_st
13.713
A
0.123572
AFFX-BioB-M_st
18.4115
A
0.382599
AFFX-BioB-3_st
11.1118
A
0.645547
AFFX-BioC-5_st
2.45283
A
0.904333
AFFX-BioC-3_st
1.5884
A
0.814869
AFFX-BioDn-5_st
21.3676
A
0.139482
AFFX-BioDn-3_st
25.9912
A
0.185131
Total number of rows:
12488
Table truncated, full table size
364 Kbytes
.
Supplementary data files not provided
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