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GEO accession:
Sample GSM74307
Query DataSets for GSM74307
Status
Public on May 19, 2008
Title
746_Rectum2_Conv
Sample type
RNA
Source name
746_Rectum2_Conv
Organism
Mus musculus
Characteristics
Strain:C3H Tissue: Rectum
Extracted molecule
total RNA
Extraction protocol
TriPure Roche + Column purification
Label
biotin
Label protocol
5 ug of cRNA was used to make biotinylated RNA
Hybridization protocol
standard Affymetrix procedure
Scan protocol
standard Affymetrix procedure
Description
746_Rectum2_Conv
Data processing
Robust Multiarray Analysis followed by GEA
Submission date
Sep 14, 2005
Last update date
May 21, 2007
Contact name
James Holzwarth
E-mail(s)
[email protected]
Phone
+41 21 785 8909
Organization name
Nestle Research Center
Department
Bioanalytical Sciences
Street address
vers chez les blanc
City
Lausanne
State/province
Vaud
ZIP/Postal code
1000
Country
Switzerland
Platform ID
GPL81
Series (1)
GSE3304
Comparison of gene expression in conventional and germ-free intestine
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
2.72831
A
0.987453
AFFX-MurIL10_at
3.5537
A
0.617401
AFFX-MurIL4_at
5.62202
A
0.327079
AFFX-MurFAS_at
21.5656
A
0.0726999
AFFX-BioB-5_at
71.6379
P
0.0239288
AFFX-BioB-M_at
97.2702
P
0.00010954
AFFX-BioB-3_at
61.7999
P
9.45E-05
AFFX-BioC-5_at
165.199
P
0.000146581
AFFX-BioC-3_at
108.46
P
7.01E-05
AFFX-BioDn-5_at
151.337
P
6.02E-05
AFFX-BioDn-3_at
817.996
P
0.000146581
AFFX-CreX-5_at
1600.65
P
4.43E-05
AFFX-CreX-3_at
2781.95
P
4.43E-05
AFFX-BioB-5_st
16.0762
M
0.0542134
AFFX-BioB-M_st
9.88791
A
0.574038
AFFX-BioB-3_st
6.44416
A
0.686277
AFFX-BioC-5_st
5.72769
A
0.737173
AFFX-BioC-3_st
2.7877
A
0.712257
AFFX-BioDn-5_st
23.4209
A
0.131361
AFFX-BioDn-3_st
27.6771
A
0.13134
Total number of rows:
12488
Table truncated, full table size
363 Kbytes
.
Supplementary data files not provided
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