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GEO accession:
Sample GSM74308
Query DataSets for GSM74308
Status
Public on May 19, 2008
Title
747_Rectum3_Conv
Sample type
RNA
Source name
747_Rectum3_Conv
Organism
Mus musculus
Characteristics
Strain:C3H Tissue: Rectum
Extracted molecule
total RNA
Extraction protocol
TriPure Roche + Column purification
Label
biotin
Label protocol
5 ug of cRNA was used to make biotinylated RNA
Hybridization protocol
standard Affymetrix procedure
Scan protocol
standard Affymetrix procedure
Description
747_Rectum3_Conv
Data processing
Robust Multiarray Analysis followed by GEA
Submission date
Sep 14, 2005
Last update date
May 21, 2007
Contact name
James Holzwarth
E-mail(s)
[email protected]
Phone
+41 21 785 8909
Organization name
Nestle Research Center
Department
Bioanalytical Sciences
Street address
vers chez les blanc
City
Lausanne
State/province
Vaud
ZIP/Postal code
1000
Country
Switzerland
Platform ID
GPL81
Series (1)
GSE3304
Comparison of gene expression in conventional and germ-free intestine
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
3.86017
A
0.932322
AFFX-MurIL10_at
4.47608
A
0.672921
AFFX-MurIL4_at
6.4927
A
0.559354
AFFX-MurFAS_at
17.5698
A
0.239063
AFFX-BioB-5_at
61.8677
P
0.0336773
AFFX-BioB-M_at
114.919
P
0.000581214
AFFX-BioB-3_at
52.0021
P
0.000258358
AFFX-BioC-5_at
167.369
P
0.000224668
AFFX-BioC-3_at
117.423
P
0.00010954
AFFX-BioDn-5_at
125.045
P
0.00010954
AFFX-BioDn-3_at
812.568
P
0.000146581
AFFX-CreX-5_at
1394.38
P
4.43E-05
AFFX-CreX-3_at
2593.64
P
4.43E-05
AFFX-BioB-5_st
12.0869
A
0.382599
AFFX-BioB-M_st
18.739
A
0.41138
AFFX-BioB-3_st
9.42383
A
0.772364
AFFX-BioC-5_st
8.38984
A
0.876428
AFFX-BioC-3_st
4.00188
A
0.699394
AFFX-BioDn-5_st
17.8732
A
0.195266
AFFX-BioDn-3_st
29.8501
A
0.205732
Total number of rows:
12488
Table truncated, full table size
362 Kbytes
.
Supplementary data files not provided
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