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GEO accession:
Sample GSM74310
Query DataSets for GSM74310
Status
Public on May 19, 2008
Title
749_Ileum2_GF
Sample type
RNA
Source name
749_Ileum2_GF
Organism
Mus musculus
Characteristics
Strain:C3H Tissue: Ileum
Extracted molecule
total RNA
Extraction protocol
TriPure Roche + Column purification
Label
biotin
Label protocol
5 ug of cRNA was used to make biotinylated RNA
Hybridization protocol
standard Affymetrix procedure
Scan protocol
standard Affymetrix procedure
Description
749_Ileum2_GF
Data processing
Robust Multiarray Analysis followed by GEA
Submission date
Sep 14, 2005
Last update date
May 21, 2007
Contact name
James Holzwarth
E-mail(s)
[email protected]
Phone
+41 21 785 8909
Organization name
Nestle Research Center
Department
Bioanalytical Sciences
Street address
vers chez les blanc
City
Lausanne
State/province
Vaud
ZIP/Postal code
1000
Country
Switzerland
Platform ID
GPL81
Series (1)
GSE3304
Comparison of gene expression in conventional and germ-free intestine
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
3.32349
A
0.904333
AFFX-MurIL10_at
1.98412
A
0.699394
AFFX-MurIL4_at
6.1581
A
0.147939
AFFX-MurFAS_at
20.5861
M
0.0542134
AFFX-BioB-5_at
87.9984
P
0.00401721
AFFX-BioB-M_at
140.149
P
5.17E-05
AFFX-BioB-3_at
64.8424
P
7.01E-05
AFFX-BioC-5_at
226.672
P
8.14E-05
AFFX-BioC-3_at
144.451
P
4.43E-05
AFFX-BioDn-5_at
206.317
P
5.17E-05
AFFX-BioDn-3_at
1009.75
P
0.000126798
AFFX-CreX-5_at
2032.27
P
4.43E-05
AFFX-CreX-3_at
3281.51
P
4.43E-05
AFFX-BioB-5_st
19.1794
A
0.0676785
AFFX-BioB-M_st
13.8543
A
0.425962
AFFX-BioB-3_st
20.7499
A
0.672921
AFFX-BioC-5_st
6.51025
A
0.749204
AFFX-BioC-3_st
9.38254
A
0.382599
AFFX-BioDn-5_st
33.4419
A
0.131361
AFFX-BioDn-3_st
37.3327
M
0.050229
Total number of rows:
12488
Table truncated, full table size
363 Kbytes
.
Supplementary data files not provided
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