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GEO accession:
Sample GSM74311
Query DataSets for GSM74311
Status
Public on May 19, 2008
Title
750_Ileum3_GF
Sample type
RNA
Source name
750_Ileum3_GF
Organism
Mus musculus
Characteristics
Strain:C3H Tissue: Ileum
Extracted molecule
total RNA
Extraction protocol
TriPure Roche + Column purification
Label
biotin
Label protocol
5 ug of cRNA was used to make biotinylated RNA
Hybridization protocol
standard Affymetrix procedure
Scan protocol
standard Affymetrix procedure
Description
750_Ileum3_GF
Data processing
Robust Multiarray Analysis followed by GEA
Submission date
Sep 14, 2005
Last update date
May 21, 2007
Contact name
James Holzwarth
E-mail(s)
[email protected]
Phone
+41 21 785 8909
Organization name
Nestle Research Center
Department
Bioanalytical Sciences
Street address
vers chez les blanc
City
Lausanne
State/province
Vaud
ZIP/Postal code
1000
Country
Switzerland
Platform ID
GPL81
Series (1)
GSE3304
Comparison of gene expression in conventional and germ-free intestine
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
3.68688
A
0.963431
AFFX-MurIL10_at
2.54723
A
0.659339
AFFX-MurIL4_at
4.29567
A
0.48511
AFFX-MurFAS_at
22.9312
P
0.036569
AFFX-BioB-5_at
76.2134
P
0.0125468
AFFX-BioB-M_at
156.43
P
5.17E-05
AFFX-BioB-3_at
98.3701
P
4.43E-05
AFFX-BioC-5_at
217.121
P
9.45E-05
AFFX-BioC-3_at
150.397
P
4.43E-05
AFFX-BioDn-5_at
212.034
P
4.43E-05
AFFX-BioDn-3_at
1264.23
P
0.000126798
AFFX-CreX-5_at
2292.95
P
4.43E-05
AFFX-CreX-3_at
3769.65
P
4.43E-05
AFFX-BioB-5_st
14.9894
A
0.227636
AFFX-BioB-M_st
15.209
A
0.39692
AFFX-BioB-3_st
5.67991
A
0.737173
AFFX-BioC-5_st
3.51796
A
0.852061
AFFX-BioC-3_st
6.31278
A
0.559359
AFFX-BioDn-5_st
37.096
M
0.050229
AFFX-BioDn-3_st
25.1628
M
0.0584438
Total number of rows:
12488
Table truncated, full table size
364 Kbytes
.
Supplementary data files not provided
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