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Sample GSM7440104 Query DataSets for GSM7440104
Status Public on Jan 09, 2024
Title Patient4-10041
Sample type RNA
 
Source name HNSCC
Organism Homo sapiens
Characteristics gender: Male
age (years): 55
site: Tongue
sample type: Primary
therapy: Naive
cancer grade: Grade-2
cancer stage: II
cohort: SC2d
Extracted molecule total RNA
Extraction protocol RNA was extracted from FFPE blocks.
Label n/a
Label protocol n/a
 
Hybridization protocol Manufacturer's protocol was followed
Scan protocol Digital analyser is used for the scanning of catridge.
Data processing nSolver software was used to normalise the data against the selected 5 specific housekeeping genes DNAJC14, GUSB, NRDE2, TFRC, UBB.
 
Submission date Jun 02, 2023
Last update date Jan 09, 2024
Contact name Nandini Pal Basak
E-mail(s) [email protected]
Organization name Farcast Biosciences
Department R&D
Street address Hosur road
City Bangalore
State/province Karnataka
ZIP/Postal code 560100
Country India
 
Platform ID GPL27956
Series (2)
GSE233980 Capturing the dynamic interactions between tumor and immune components of the tumor micro-environment is important for determining efficacy of anti-PD1 treatment [TBL]
GSE234138 Capturing the dynamic interactions between tumor and immune components of the tumor micro-environment is important for determining efficacy of anti-PD1 treatment

Data table header descriptions
ID_REF
VALUE Normalized counts extracted by nSOLVER software against the specific 5 housekeeping genes.

Data table
ID_REF VALUE
A2M 10.88
ACVR1C 4.46
ADAM12 10.3
ADGRE1 3.82
ADM 10.08
ADORA2A 5.61
AKT1 11.48
ALDOA 12.9
ALDOC 7.76
ANGPT1 5.3
ANGPT2 8.06
ANGPTL4 7.35
ANLN 9.58
APC 8.18
APH1B 5.41
API5 10.5
APLNR 6.08
APOE 10.54
APOL6 9.59
AQP9 6.94

Total number of rows: 784

Table truncated, full table size 8 Kbytes.




Supplementary file Size Download File type/resource
GSM7440104_10041.RCC.gz 8.7 Kb (ftp)(http) RCC
Processed data included within Sample table

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