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Sample GSM76360 Query DataSets for GSM76360
Status Public on Jul 21, 2006
Title EDL-t10; transgenic extensor digitorum longus 10 month
Sample type RNA
 
Source name extensor digitorum longus muscle
Organism Mus musculus
Characteristics Transgenic, snap frozen, extensor digitorum longus muscle, 10 month age animal
Extracted molecule total RNA
Extraction protocol Standard Trizol protocol extraction. Total RNA pools from 3-5 mice were processed and hybridized to each microarray.
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Transgenic for alpha tropomyosin slow, snap frozen, extensor digitorum longus muscle, 10 month age animal

The CEL file for this submission could not be fully recovered; the linked supplementary file is approximately 75% complete

Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Sep 29, 2005
Last update date Dec 18, 2007
Contact name Despina Sanoudou
E-mail(s) [email protected]
Phone +30-210-6597453
Fax +30-210-6597545
Organization name Foundation for Biomedical Research, Academy of Athens
Department Molecular Biology
Lab Sanoudou Lab
Street address Soranou Efesiou 4
City Athens
ZIP/Postal code 115 27
Country Greece
 
Platform ID GPL81
Series (1)
GSE3384 Nemaline myopathy mouse model

Data table header descriptions
ID_REF Affymetrix identification codes for each probe set
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-MurIL2_at 31.4 A
AFFX-MurIL10_at 245 A
AFFX-MurIL4_at 24.7 A
AFFX-MurFAS_at 467.1 P
AFFX-BioB-5_at 1296.7 P
AFFX-BioB-M_at 1764.7 P
AFFX-BioB-3_at 871.8 P
AFFX-BioC-5_at 3996.2 P
AFFX-BioC-3_at 2936.9 P
AFFX-BioDn-5_at 3317.1 P
AFFX-BioDn-3_at 17573.4 P
AFFX-CreX-5_at 35579.7 P
AFFX-CreX-3_at 60782.2 P
AFFX-BioB-5_st 70.5 A
AFFX-BioB-M_st 74.3 A
AFFX-BioB-3_st 40.8 A
AFFX-BioC-5_st 69.2 A
AFFX-BioC-3_st 38.2 A
AFFX-BioDn-5_st 443.2 A
AFFX-BioDn-3_st 362.7 A

Total number of rows: 12488

Table truncated, full table size 218 Kbytes.




Supplementary file Size Download File type/resource
GSM76360.EXP.gz 481 b (ftp)(http) EXP

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