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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 21, 2006 |
| Title |
PLT-t7; transgenic plantaris 7 month |
| Sample type |
RNA |
| |
|
| Source name |
plantaris muscle
|
| Organism |
Mus musculus |
| Characteristics |
Transgenic, snap frozen, plantaris muscle, 7month age animal
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Standard Trizol protocol extraction. Total RNA pools from 3-5 mice were processed and hybridized to each microarray.
|
| Label |
biotin
|
| Label protocol |
Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
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| |
|
| Hybridization protocol |
standard Affymetrix procedures
|
| Scan protocol |
standard Affymetrix procedures
|
| Description |
Transgenic for alpha tropomyosin slow, snap frozen, plantaris muscle, 7month age animal
|
| Data processing |
Affymetrix Microarray Suite version 5.0
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| |
|
| Submission date |
Sep 29, 2005 |
| Last update date |
Jul 20, 2006 |
| Contact name |
Despina Sanoudou |
| E-mail(s) |
[email protected]
|
| Phone |
+30-210-6597453
|
| Fax |
+30-210-6597545
|
| Organization name |
Foundation for Biomedical Research, Academy of Athens
|
| Department |
Molecular Biology
|
| Lab |
Sanoudou Lab
|
| Street address |
Soranou Efesiou 4
|
| City |
Athens |
| ZIP/Postal code |
115 27 |
| Country |
Greece |
| |
|
| Platform ID |
GPL81 |
| Series (1) |
| GSE3384 |
Nemaline myopathy mouse model |
|
| Data table header descriptions |
| ID_REF |
Affymetrix identification codes for each probe set |
| VALUE |
MAS5-calculated Signal intensity |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
| AFFX-MurIL2_at |
56.9 |
A |
| AFFX-MurIL10_at |
149.9 |
A |
| AFFX-MurIL4_at |
41.7 |
A |
| AFFX-MurFAS_at |
261.5 |
A |
| AFFX-BioB-5_at |
670.2 |
P |
| AFFX-BioB-M_at |
651.9 |
M |
| AFFX-BioB-3_at |
430.6 |
P |
| AFFX-BioC-5_at |
1905.9 |
P |
| AFFX-BioC-3_at |
1484.6 |
P |
| AFFX-BioDn-5_at |
1752.7 |
P |
| AFFX-BioDn-3_at |
9602.6 |
P |
| AFFX-CreX-5_at |
17546.1 |
P |
| AFFX-CreX-3_at |
33466.2 |
P |
| AFFX-BioB-5_st |
233.4 |
A |
| AFFX-BioB-M_st |
38.5 |
A |
| AFFX-BioB-3_st |
74.2 |
A |
| AFFX-BioC-5_st |
46.8 |
A |
| AFFX-BioC-3_st |
33.5 |
A |
| AFFX-BioDn-5_st |
113.3 |
A |
| AFFX-BioDn-3_st |
244.7 |
A |
Total number of rows: 12488
Table truncated, full table size 219 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM76372.CEL.gz |
2.9 Mb |
(ftp)(http) |
CEL |
| GSM76372.EXP.gz |
494 b |
(ftp)(http) |
EXP |
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