|
| Status |
Public on Aug 30, 2011 |
| Title |
USC_ChipSeq_HCT-116_TCF7L2_UCDavis |
| Sample type |
SRA |
| |
|
| Source name |
HCT-116
|
| Organism |
Homo sapiens |
| Characteristics |
lab: USC
lab description: Farnham - University of Southern California
datatype: ChipSeq
datatype description: ChIP-Seq
cell: HCT-116
cell organism: human
cell description: colorectal carcinoma (PMID: 7214343)
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
antibody: TCF7L2
antibody antibodydescription: Rabbit monoclonal
antibody targetdescription: TCF7L2 (formerly known as TCF4) is a member of the high mobility group (HMG) DNA binding protein family of transcription factors which consists of the following: Lymphoid enhancer factor 1 (LEF1), T Cell Factor 1 (TCF1), TCF3 and TCF4
antibody vendorname: Cell Signaling Technology
antibody vendorid: 2569S
control: UCDavis
control description: Input library was prepared at UC Davis.
control: UCDavis
control description: Input library was prepared at UC Davis.
controlid: wgEncodeEH000627
labversion: Fragmented using Bioruptor, precipitated with protein G magnetic beads,
replicate: 1
replicate description: tier 1
softwareversion: PeakSeq1.0 (fdr 0.001)
|
| Biomaterial provider |
ATCC
|
| Treatment protocol |
None
|
| Growth protocol |
HCT-116_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
http://www.roadmapepigenomics.org/protocols
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
|
| |
|
| Submission date |
Aug 18, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
[email protected]
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL10999 |
| Series (1) |
| GSE31477 |
ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard |
|
| Relations |
| SRA |
SRX094469 |
| BioSample |
SAMN00714494 |
| Named Annotation |
GSM782123_wgEncodeSydhTfbsHct116Tcf7l2UcdSig.bigWig |
