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Sample GSM78882 Query DataSets for GSM78882
Status Public on Oct 25, 2005
Title Radium Human 22k v2.0, NOWAC12
Sample type RNA
 
Channel 1
Source name Stratagen reference
Organism Homo sapiens
Characteristics Stratagen reference
Extracted molecule total RNA
Label Cy3
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled
 
Channel 2
Source name NOWAC12
Organism Homo sapiens
Characteristics HRT use 15.3 pmol/ug cRNA
Extracted molecule total RNA
Label Cy5
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled
 
 
Hybridization protocol use of stabilization and drying solution, Agilent, Palo Alto, CA
Description Whole blood samples collectedin PAXgene tubes
Data processing Agilent Feature Extraction software version A.7.5.1 (default settings)
 
Submission date Oct 20, 2005
Last update date Oct 21, 2005
Contact name Vanessa Dumeaux
E-mail(s) [email protected]
Organization name "The Norwegian Women and Cancer project"
Street address University of Tromsoe
City Tromsoe
ZIP/Postal code 9037
Country Norway
 
Platform ID GPL887
Series (1)
GSE3492 Whole-blood samples from women exposed to hormone replacement therapy

Data table header descriptions
ID_REF
VALUE Log (base 10) of the ratio of the processed signals of Channel 2 to Channel 1
Cy5MeanSignal Raw mean signal of feature in Cy5 channel
Cy3MeanSignal Raw mean signal of feature in Cy3 channel
Cy5BGMedianSignal Median local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMedianSignal Median local background signal (local to corresponding feature) for Cy3 channel
Cy5BGMeanSignal Mean local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMeanSignal Mean local background signal (local to corresponding feature) for Cy3 channel
Cy5ProcessedSignal Dye-normalized signal for Cy5 channel after surrogate algorithm. Used for computation of VALUE
Cy3ProcessedSignal Dye-normalized signal for Cy3 channel after surrogate algorithm. Used for computation of VALUE

Data table
ID_REF VALUE Cy5MeanSignal Cy3MeanSignal Cy5BGMedianSignal Cy3BGMedianSignal Cy5BGMeanSignal Cy3BGMeanSignal Cy5ProcessedSignal Cy3ProcessedSignal
1 -1.274098391 114.85 1213.35 45 54 45.74101 54.60432 302.7522 5690.962
2 null 76.47458 249.7797 45 55 45.42123 55.39041 48.91445 155.5237
3 null 99.59649 291 45.5 55 45.65 55.43571 219.9419 390.2463
4 null 554.8772 1406.912 45 55 45.2526 55.69204 3553.183 7065.279
5 null 261.8571 488.1071 45 56 45.053 56.00353 1428.715 1593.504
6 null 90.13559 285.5424 46 55 45.63605 55.55102 140.9267 354.1974
7 null 94.47458 1248.475 45 56 45.40741 56.38148 150.1844 5809.979
8 null 559.2623 460.5082 45 56 45.21352 56.10676 3649.771 1466.565
9 null 220.6333 381.8333 45 56 45.21942 55.69065 1131.401 981.9926
10 null 82.375 220.0893 45 56 44.95572 56.34317 79.28195 53.6279
11 null 108 240.5439 45 57 45.51601 57.14235 313.8447 157.1246
12 null 89.98333 324.65 45 57 45.63538 56.97112 137.4682 565.1651
13 null 81.27586 217.2069 45 56 45.3617 56.47518 69.14463 46.67101
14 null 92.68966 1289.655 45 56 45.63763 57.20209 139.1504 6049.502
15 null 619.7333 1243.517 45 57 45.20144 57.48201 4037.491 6129.144
16 null 105.9298 224.2807 45 57 45.94505 57.25641 309.5311 88.36839
17 null 79.32787 244.3443 46 57 45.81413 56.77695 48.77617 165.9901
18 null 183.2679 282.1429 46 58 46.16187 57.89928 879.9846 425.0859
20 null 92.08621 291.5862 45 57 45.2242 57.63345 162.2007 419.6102
21 null 95.18966 1343.776 45 57 45.37809 57.73145 160.5733 6404.854

Total number of rows: 22153

Table truncated, full table size 1661 Kbytes.




Supplementary data files not provided
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