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Status
Public on Mar 29, 2006
Title
Expression data of rectal cancer T48
Sample type
RNA
Source name
Patient ID T48
Organism
Homo sapiens Characteristics
Tissue: rectal cancer
Extracted molecule
total RNA
Extraction protocol
Surgically isolated human colorectal cancer tissues were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was extracted using the Sepasol-RNA I (WAKO, Osaka, Japan) according to the manufacturer's instructions. Total RNA was then purified using an RNeasy column (Qiagen, Austin, TX).
Label
biotin
Label protocol
Approximately 5 ug of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
training-non-responder
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Oct 21, 2005
Last update date
Mar 16, 2009
Contact name
Toshiaki Watanabe
Phone
81-3-5800-8653
Organization name
University of Tokyo
Department
Department of Surgical Oncology
Street address
7-3-1, Hongo
City
Bunkyo-ku
State/province
Tokyo
ZIP/Postal code
113-8655
Country
Japan
Platform ID
GPL8300 Series (1)
GSE3493 Rectal Cancer Cells and Radiation-sensitivity
Data table header descriptions ID_REF VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table ID_REF VALUE ABS_CALL 100_g_at
432.3
A
1000_at
2256.8
P
1001_at
25.6
A
1002_f_at
70.1
A
1003_s_at
329.5
A
1004_at
153.8
A
1005_at
46.9
A
1006_at
20.5
A
1007_s_at
2972.4
P
1008_f_at
6774.5
P
1009_at
2829.8
P
101_at
58.5
A
1010_at
14.1
A
1011_s_at
636.8
P
1012_at
16.8
A
1013_at
10.4
A
1014_at
618
A
1015_s_at
54.6
A
1016_s_at
43
A
1017_at
105.3
A
12625 205 Kbytes .Supplementary data files not provided
