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GEO accession:
Sample GSM8106484
Query DataSets for GSM8106484
Status
Public on Feb 27, 2024
Title
Control ChIP-seq from whole organism (ENCLB187TRI)
Sample type
SRA
Source name
Caenorhabditis elegans strain OP433 (unc-119(tm4063) III; wgIs433) hermaphrodite late embryo insertion targeting C. elegans hlh-30
Organism
Caenorhabditis elegans
Characteristics
cell_type: whole organism
biomaterial_type: whole organisms
biosample encode accession: ENCBS419NRE (SAMN40084961)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS419NRE
note: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-30
Sex: hermaphrodite
dev stage: late embryonic
age: unknown
donor_id: ENCDO958UOX
lab: Valerie Reinke, Yale
source: Valerie Reinke
link: ENCBS419NRE at ENCODE;
https://www.encodeproject.org/ENCBS419NRE/
Extracted molecule
genomic DNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/5de8421c-b074-44ed-985c-638d2bc4a0a3/@@download/attachment/Reinke_Lab_ModENCODE_ChIP_protocol_%28revised%205-24-13%29.pdf
general protocol:
https://www.encodeproject.org/documents/e7ede93f-861a-4269-aba2-d0059ffb62b1/@@download/attachment/Stanford_sequencin_ChIP_Protocol_2012WN.pdf
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina Genome Analyzer IIx
Description
https://www.encodeproject.org/experiments/ENCSR128QIX/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing HLH-30-eGFP fusion proteins.
experiment encode accession: ENCSR128QIX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB187TRI
fragmentation methods: sonication (generic microtip)
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Feb 24, 2024
Last update date
Feb 27, 2024
Contact name
ENCODE DCC
E-mail(s)
[email protected]
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL13776
Series (1)
GSE256754
Control ChIP-seq from whole organism (ENCSR128QIX)
Relations
BioSample
SAMN40084961
Supplementary file
Size
Download
File type/resource
GSM8106484_ENCFF017IWJ_signal_of_unique_reads_ce11.bigWig
9.6 Mb
(ftp)
(http)
BIGWIG
GSM8106484_ENCFF040DAF_read-depth_normalized_signal_ce10.bigWig
9.6 Mb
(ftp)
(http)
BIGWIG
GSM8106484_ENCFF171JIF_signal_of_unique_reads_ce10.bigWig
9.6 Mb
(ftp)
(http)
BIGWIG
GSM8106484_ENCFF565NUL_read-depth_normalized_signal_ce11.bigWig
9.6 Mb
(ftp)
(http)
BIGWIG
GSM8106484_ENCLB187TRI_README.txt.gz
557 b
(ftp)
(http)
TXT
Raw data are available in SRA
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