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Sample GSM835142 Query DataSets for GSM835142
Status Public on Nov 05, 2012
Title Chronic hepatitis C 76
Sample type RNA
 
Source name Exosome
Organism Homo sapiens
Characteristics sample type: exosome rich fraction from sera
disease state: Chronic hepatitis C
gender: female
age: 58
Extracted molecule total RNA
Extraction protocol The ExoQuicki kit (System Biosciences) was used to extract total RNA including microRNA from exosome fraction.
Label Cy3
Label protocol One-color microRNA labeling with Cy3 fluorescence were performed in accordance with the manufacturer’s procedure.
 
Hybridization protocol Hybridization were performed in accordance with the manufacturer’s procedure.
Scan protocol The array was scanned with a laser scanner (G2565BA; Agilent)
Data processing Feature Extraction 9.5 software (Agilent) was used to obtain the microarray raw data.
 
Submission date Nov 16, 2011
Last update date Nov 05, 2012
Contact name toshihito tanahashi
E-mail(s) [email protected]
Organization name Tokushima University
Street address Kuramoto-cho 3-18-15
City Tokushima city
ZIP/Postal code 7708503
Country Japan
 
Platform ID GPL10656
Series (1)
GSE33857 miRNA analysis is useful to diagnosis of liver disease, and evaluation of the grade of liver disease.

Data table header descriptions
ID_REF
VALUE gTotalGeneSignal

Data table
ID_REF VALUE
DarkCorner 0.1
NC1_00000197 0.1
NC1_00000215 0.1
NC2_00079215 0.1
NC2_00092197 0.1
NC2_00106057 0.1
NC2_00122731 0.1
NegativeControl 0.1
SCorner3 0.1
dmr_285 0.1
dmr_3 0.1
dmr_308 0.1
dmr_316 0.1
dmr_31a 0.1
dmr_6 0.1
hsa-let-7a 0.1
hsa-let-7a* 0.1
hsa-let-7b 80.328
hsa-let-7b* 14.17652
hsa-let-7c 7.77827

Total number of rows: 909

Table truncated, full table size 16 Kbytes.




Supplementary file Size Download File type/resource
GSM835142_OCH_258_Exosome.txt.gz 794.4 Kb (ftp)(http) TXT
Processed data included within Sample table

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