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Sample GSM85226

Query DataSets for GSM85226

Status

Public on Jun 30, 2006

Title

thyroid_tumor_5

Sample type

RNA

Source name

human thyroid

Organism

Homo sapiens

Characteristics

thyroid sample containing tumor cells

Extracted molecule

total RNA

Label

biotin

Label protocol

Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures

Description

papillary thyroid carcinoma tissue

Data processing

dChip v 1.3 was used for normalization, model-based gene expression estimatation and outlier detection ; Affymetrix Microarray Suite version 5.0 was used to calculate the present call of each transcript

Submission date

Nov 25, 2005

Last update date

Aug 28, 2018

Contact name

Ismael Reyes

E-mail(s)

[email protected]

Organization name

New York Medical College

Street address

Microbiology department BSB room 311

City

Valhalla

State/province

ZIP/Postal code

10595

Country

USA

Platform ID

GPL570

Series (1)

GSE3678

PTC versus paired normal thyroid tissue

Relations

Reanalyzed by

GSE64985

Reanalyzed by

GSE119087

Data table header descriptions
ID_REF
VALUE	model-based expression estimates using dChip v 1.3
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF	VALUE	ABS_CALL
AFFX-BioB-5_at	743.206	P
AFFX-BioB-M_at	1023.7	P
AFFX-BioB-3_at	1013.26	P
AFFX-BioC-5_at	2662.29	P
AFFX-BioC-3_at	2556.28	P
AFFX-BioDn-5_at	3351.05	P
AFFX-BioDn-3_at	5741.22	P
AFFX-CreX-5_at	8113.8	P
AFFX-CreX-3_at	9182.83	P
AFFX-DapX-5_at	29.3958	A
AFFX-DapX-M_at	36.335	A
AFFX-DapX-3_at	46.4083	A
AFFX-LysX-5_at	48.6788	A
AFFX-LysX-M_at	66.323	A
AFFX-LysX-3_at	26.0502	A
AFFX-PheX-5_at	39.8374	A
AFFX-PheX-M_at	24.8307	A
AFFX-PheX-3_at	35.2424	A
AFFX-ThrX-5_at	26.4664	A
AFFX-ThrX-M_at	71.417	A

Total number of rows: 54675

Table truncated, full table size 1105 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM85226.CEL.gz	7.5 Mb	(ftp)(http)	CEL
GSM85226.EXP.gz	270 b	(ftp)(http)	EXP