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Status
Public on Dec 09, 2005
Title
OH4, chip MG_U74Bv2
Sample type
RNA
Source name
Mesenchymal cells, Limb bud
Organism
Mus musculus Characteristics
Strain: CD-1
Treatment protocol
Assays to confirm viability: Cells were allowed to differentiate <i>in vitro</i> into chondrocytes
Extracted molecule
total RNA
Extraction protocol
RNA prep method: RNeasy
Label
Biotin
Description
This sample was analyzed as part of the Stem Cell Genomics Project (http://www.scgp.ca:8080/StemBase/ ). The biological material was submitted to the Ontario Genomics Innovation Centre (http://www.ottawagenomecenter.ca/ ) by Dr. T. Michael Underhill ([email protected] ; 1400 Western Road) for analysis.http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=30 http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=30#SAMPLE_30
Data processing
Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06
Submission date
Dec 07, 2005
Last update date
Jan 19, 2006
Organization
Ottawa Hospital Research Institute
Phone
(613) 737-8899 -73255
Department
Cellular and Molecular Medicine
Lab
Ottawa Bioinformatics Core Facility
Street address
501 Smyth Rd.
City
Ottawa
State/province
ON
ZIP/Postal code
K1H 8L6
Country
Canada
Platform ID
GPL82 Series (1)
GSE3770 Temporal Analysis of Differentiating Limb Bud Mesenchymal Cell Gene Expression
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript. Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06.
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
168.302
A
0.969024
AFFX-MurIL10_at
702.095
A
0.52976
AFFX-MurIL4_at
538.474
A
0.354453
AFFX-MurFAS_at
775.679
A
0.39692
AFFX-BioB-5_at
8070.31
P
0.00141043
AFFX-BioB-M_at
22404.8
P
4.42873e-05
AFFX-BioB-3_at
11639.2
P
0.000169227
AFFX-BioC-5_at
24999.3
P
8.14279e-05
AFFX-BioC-3_at
22070.8
P
5.16732e-05
AFFX-BioDn-5_at
23910
P
6.02111e-05
AFFX-BioDn-3_at
97692.8
P
5.16732e-05
AFFX-CreX-5_at
237656
P
4.42873e-05
AFFX-CreX-3_at
290570
P
4.42873e-05
AFFX-BioB-5_st
2255.06
A
0.227636
AFFX-BioB-M_st
976.608
A
0.58862
AFFX-BioB-3_st
621.666
A
0.58862
AFFX-BioC-5_st
455.118
A
0.949771
AFFX-BioC-3_st
238.452
A
0.749204
AFFX-BioDn-5_st
3402.9
A
0.0726999
AFFX-BioDn-3_st
5408.29
P
0.0239288
12477 360 Kbytes .Supplementary file Size Download File type/resource GSM86511.CEL.gz
2.7 Mb
(ftp) (http) CEL
GSM86511.EXP.gz
522 b
(ftp) (http) EXP
