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Sample GSM874239 Query DataSets for GSM874239
Status Public on Jun 04, 2012
Title ovary_adult_1
Sample type RNA
 
Source name Mouse adult ovary
Organism Mus musculus
Characteristics gender: female
strain: C57BL/6
tissue: ovary
age: 10-week-old
Treatment protocol Gonads were dissected from 10-week-old mice.
Growth protocol The C57BL/6 mice were obtained from a commercial breeder.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using RNeasy kit (Qiagen) according to the
manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared using MessageAmp aRNA Kit (Ambion) according to the manufacturer's instructions from 1 ug total RNA.
 
Hybridization protocol Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in a fluidics system.
Scan protocol GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
Description Gene expression data from 10-week-old ovaries.
Data processing The data were analyzed with GeneChip Operating Software (GCOS, version 1) using Affymetrix default analysis settings.
 
Submission date Feb 13, 2012
Last update date Jun 04, 2012
Contact name Makiko Tsutsumi
Organization name Fujita Health University
Department ICMS
Lab Div. Mol. Genet.
Street address 1-98 Dengakugakubo, Kutsukake-cho
City Toyoake
State/province Aichi
ZIP/Postal code 470-1192
Country Japan
 
Platform ID GPL1261
Series (1)
GSE35734 Screening of genes involved in chromosome segregation in meiosis I

Data table header descriptions
ID_REF
VALUE GCOS/MAS5 normalized signal intensity
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 229.80083 P 6.62E-04
AFFX-BioB-M_at 409.06696 P 1.10E-04
AFFX-BioB-3_at 175.80269 P 5.17E-05
AFFX-BioC-5_at 584.09863 P 8.14E-05
AFFX-BioC-3_at 542.0475 P 4.43E-05
AFFX-BioDn-5_at 662.5425 P 5.17E-05
AFFX-BioDn-3_at 2811.9802 P 8.14E-05
AFFX-CreX-5_at 6583.1343 P 5.17E-05
AFFX-CreX-3_at 7858.3516 P 4.43E-05
AFFX-DapX-5_at 9.609099 A 0.1161128
AFFX-DapX-M_at 10.964857 A 0.31372303
AFFX-DapX-3_at 4.821027 A 0.57403773
AFFX-LysX-5_at 1.2458712 A 0.8341386
AFFX-LysX-M_at 7.8269053 A 0.7371734
AFFX-LysX-3_at 2.0922658 A 0.5445875
AFFX-PheX-5_at 1 A 0.9715427
AFFX-PheX-M_at 1.0792568 A 0.9273001
AFFX-PheX-3_at 7.440284 A 0.61740077
AFFX-ThrX-5_at 4.9607453 A 0.4554125
AFFX-ThrX-M_at 12.272551 A 0.38259923

Total number of rows: 45101

Table truncated, full table size 1420 Kbytes.




Supplementary file Size Download File type/resource
GSM874239_AF.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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