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Sample GSM874243 Query DataSets for GSM874243
Status Public on Jun 04, 2012
Title ovary_15.5 dpc_1
Sample type RNA
 
Source name Mouse fetal ovary
Organism Mus musculus
Characteristics gender: female
strain: C57BL/6
tissue: ovary
age: 15.5 days postcoitum
Treatment protocol Gonads were dissected from 15.5 dpc mice.
Growth protocol The C57BL/6 mice were obtained from a commercial breeder.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using RNeasy kit (Qiagen) according to the
manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared using MessageAmp aRNA Kit (Ambion) according to the manufacturer's instructions from 1 ug total RNA.
 
Hybridization protocol Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in a fluidics system.
Scan protocol GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
Description Gene expression data from 15.5 dpc ovaries.
Data processing The data were analyzed with GeneChip Operating Software (GCOS, version 1) using Affymetrix default analysis settings.
 
Submission date Feb 13, 2012
Last update date Jun 04, 2012
Contact name Makiko Tsutsumi
Organization name Fujita Health University
Department ICMS
Lab Div. Mol. Genet.
Street address 1-98 Dengakugakubo, Kutsukake-cho
City Toyoake
State/province Aichi
ZIP/Postal code 470-1192
Country Japan
 
Platform ID GPL1261
Series (1)
GSE35734 Screening of genes involved in chromosome segregation in meiosis I

Data table header descriptions
ID_REF
VALUE GCOS/MAS5 normalized signal intensity
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 272.668 P 2.25E-04
AFFX-BioB-M_at 436.53766 P 4.43E-05
AFFX-BioB-3_at 226.16992 P 5.17E-05
AFFX-BioC-5_at 759.80414 P 9.45E-05
AFFX-BioC-3_at 769.16565 P 4.43E-05
AFFX-BioDn-5_at 885.69525 P 4.43E-05
AFFX-BioDn-3_at 3272.6223 P 6.02E-05
AFFX-CreX-5_at 8538.099 P 5.17E-05
AFFX-CreX-3_at 9206.907 P 4.43E-05
AFFX-DapX-5_at 7.2233152 A 0.2628266
AFFX-DapX-M_at 22.605814 A 0.1161128
AFFX-DapX-3_at 1.7648398 A 0.97809815
AFFX-LysX-5_at 1.2960446 A 0.55935365
AFFX-LysX-M_at 2.6150677 A 0.72485405
AFFX-LysX-3_at 2.4693832 A 0.7371734
AFFX-PheX-5_at 1.6431401 A 0.94977105
AFFX-PheX-M_at 1.4860842 A 0.65933883
AFFX-PheX-3_at 18.372108 A 0.38259923
AFFX-ThrX-5_at 1.9106287 A 0.7609373
AFFX-ThrX-M_at 5.429375 A 0.44064635

Total number of rows: 45101

Table truncated, full table size 1421 Kbytes.




Supplementary file Size Download File type/resource
GSM874243_FF.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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