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Status
Public on Dec 24, 2005
Title
Brn3a Knockout TG e13.5 U74Av2 1
Sample type
RNA
Source name
e13.5 Trigeminal Ganglion
Organism
Mus musculus Characteristics
Brn3a mutant trigeminal ganglia pooled from e13.5 mouse embryos.
Extracted molecule
total RNA
Label
Affymetrix
Description
Trigeminal ganglia were dissected, placed in RNAse inhibitor solution (RNAlater, Ambion) and frozen until enough tissue was harvested to be pooled by genotype. Approximately 10-12 ganglia were pooled for a single analysis, which was extracted using the RNeasy system (Qiagen).
Data processing
MAS 5.0
Submission date
Dec 22, 2005
Last update date
Dec 23, 2005
Contact name
Eric Turner
E-mail(s)
[email protected] Phone
(858)534-1568
Fax
(858)534-7653
URL
http://medicine.ucsd.edu/neuroembryologylab/ Organization name
University of California San Diego
Department
Psychiatry
Street address
9500 Gilman Dr., BSB 2077
City
La Jolla
State/province
CA
ZIP/Postal code
92093-0603
Country
USA
Platform ID
GPL81 Series (2)
GSE3895 Coordinated regulation of gene expression by Brn3a in developing sensory ganglia
GSE5658 Conserved and distinct regulatory targets of Brn3a at different levels of the sensory axis
Data table header descriptions ID_REF VALUE Signal. A measure of the abundance of a transcript.
ABS_CALL Absolute analysis call. Indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE Detection P-value. Indicates the significance level of the detection call.
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
24.5
A
0.945787
AFFX-MurIL10_at
131.4
A
0.41138
AFFX-MurIL4_at
32.2
A
0.52976
AFFX-MurFAS_at
18.8
A
0.51489
AFFX-BioB-5_at
1735.8
P
0.000581
AFFX-BioB-M_at
3495.6
P
0.000052
AFFX-BioB-3_at
1915.6
P
0.000044
AFFX-BioC-5_at
6148
P
0.00007
AFFX-BioC-3_at
4276.7
P
0.000044
AFFX-BioDn-5_at
4588.3
P
0.000044
AFFX-BioDn-3_at
23898.9
P
0.000081
AFFX-CreX-5_at
47710.4
P
0.000044
AFFX-CreX-3_at
62495
P
0.000044
AFFX-BioB-5_st
149.3
A
0.216524
AFFX-BioB-M_st
161.4
A
0.425962
AFFX-BioB-3_st
49
A
0.804734
AFFX-BioC-5_st
57.7
A
0.760937
AFFX-BioC-3_st
17.4
A
0.60308
AFFX-BioDn-5_st
819
M
0.050229
AFFX-BioDn-3_st
558.5
P
0.015183
12488 321 Kbytes .Supplementary data files not provided
