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Status
Public on Jan 04, 2006
Title
1251 (HG-U95A)
Sample type
RNA
Source name
Primary Tumor
Organism
Homo sapiens Characteristics
Age Diagnosis: 17, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:100
Extracted molecule
total RNA
Label
Biotin
Label protocol
Standard Affymetrix protocol
Description
Primary neuroblastoma tumor.
Data processing
Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
Submission date
Jan 03, 2006
Last update date
Mar 16, 2009
Contact name
Jayanti Jagannathan
E-mail(s)
[email protected] Phone
2674262286
Organization name
Childrens Hospital of Philadelphia
Department
Oncology
Street address
34th & Civic center blvd
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platform ID
GPL8300 Series (1)
GSE3960 Classification of neuroblastoma by integrating gene expression pattern with regional alterations in DNA copy number
Data table header descriptions ID_REF VALUE Probe-Profiler -calculated Signal intensity
Data table ID_REF VALUE AFFX-MurIL2_at
11.1723
AFFX-MurIL10_at
21.1878
AFFX-MurIL4_at
5.03706
AFFX-MurFAS_at
16.659
AFFX-BioB-5_at
154.788
AFFX-BioB-M_at
191.307
AFFX-BioB-3_at
193.206
AFFX-BioC-5_at
390.711
AFFX-BioC-3_at
399.574
AFFX-BioDn-5_at
422.255
AFFX-BioDn-3_at
1589.69
AFFX-CreX-5_at
2411.95
AFFX-CreX-3_at
2670.95
AFFX-BioB-5_st
93.6298
AFFX-BioB-M_st
61.3765
AFFX-BioB-3_st
-7.39852
AFFX-BioC-5_st
-0.415613
AFFX-BioC-3_st
22.3093
AFFX-BioDn-5_st
187.025
AFFX-BioDn-3_st
74.1081
12625 212 Kbytes .Supplementary file Size Download File type/resource GSM90321.CEL.gz
2.8 Mb
(ftp) (http) CEL
