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Status
Public on Jan 04, 2006
Title
1253 (HG-U95A)
Sample type
RNA
Source name
Primary Tumor
Organism
Homo sapiens Characteristics
Age Diagnosis: 9, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:90
Extracted molecule
total RNA
Label
Biotin
Label protocol
Standard Affymetrix protocol
Description
Primary neuroblastoma tumor.
Data processing
Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
Submission date
Jan 03, 2006
Last update date
Mar 16, 2009
Contact name
Jayanti Jagannathan
E-mail(s)
[email protected] Phone
2674262286
Organization name
Childrens Hospital of Philadelphia
Department
Oncology
Street address
34th & Civic center blvd
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platform ID
GPL8300 Series (1)
GSE3960 Classification of neuroblastoma by integrating gene expression pattern with regional alterations in DNA copy number
Data table header descriptions ID_REF VALUE Probe-Profiler -calculated Signal intensity
Data table ID_REF VALUE AFFX-MurIL2_at
7.79605
AFFX-MurIL10_at
15.4159
AFFX-MurIL4_at
2.99605
AFFX-MurFAS_at
11.6662
AFFX-BioB-5_at
120.111
AFFX-BioB-M_at
133.21
AFFX-BioB-3_at
147.856
AFFX-BioC-5_at
343.011
AFFX-BioC-3_at
373.119
AFFX-BioDn-5_at
434.903
AFFX-BioDn-3_at
1118.09
AFFX-CreX-5_at
2572.23
AFFX-CreX-3_at
2515.85
AFFX-BioB-5_st
57.815
AFFX-BioB-M_st
42.3352
AFFX-BioB-3_st
-10.9276
AFFX-BioC-5_st
8.83084
AFFX-BioC-3_st
18.8305
AFFX-BioDn-5_st
94.2701
AFFX-BioDn-3_st
29.7488
12625 212 Kbytes .Supplementary file Size Download File type/resource GSM90322.CEL.gz
2.7 Mb
(ftp) (http) CEL
