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Sample GSM90330 Query DataSets for GSM90330
Status Public on Jan 04, 2006
Title 1556 (HG-U95A)
Sample type RNA
 
Source name Primary Tumor
Organism Homo sapiens
Characteristics Age Diagnosis: 26, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:ND
Extracted molecule total RNA
Label Biotin
Label protocol Standard Affymetrix protocol
 
Description Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
Data processing Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
 
Submission date Jan 03, 2006
Last update date Mar 16, 2009
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL8300
Series (1)
GSE3960 Classification of neuroblastoma by integrating gene expression pattern with regional alterations in DNA copy number

Data table header descriptions
ID_REF
VALUE Probe-Profiler -calculated Signal intensity

Data table
ID_REF VALUE
AFFX-MurIL2_at 19.9208
AFFX-MurIL10_at 39.9344
AFFX-MurIL4_at 2.05397
AFFX-MurFAS_at 12.2979
AFFX-BioB-5_at 117.903
AFFX-BioB-M_at 125.97
AFFX-BioB-3_at 141.354
AFFX-BioC-5_at 332.93
AFFX-BioC-3_at 223.284
AFFX-BioDn-5_at 227.186
AFFX-BioDn-3_at 960.201
AFFX-CreX-5_at 2042.91
AFFX-CreX-3_at 2177.14
AFFX-BioB-5_st 200.604
AFFX-BioB-M_st 164.676
AFFX-BioB-3_st -29.3527
AFFX-BioC-5_st 130.468
AFFX-BioC-3_st 39.4839
AFFX-BioDn-5_st 137.398
AFFX-BioDn-3_st 49.9534

Total number of rows: 12625

Table truncated, full table size 212 Kbytes.




Supplementary file Size Download File type/resource
GSM90330.CEL.gz 2.7 Mb (ftp)(http) CEL

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