Age Diagnosis: 823, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:ND
Extracted molecule
total RNA
Label
Biotin
Label protocol
Standard Affymetrix protocol
Description
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
Data processing
Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
