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GEO accession:
Sample GSM92920
Query DataSets for GSM92920
Status
Public on Jan 28, 2006
Title
43240
Sample type
RNA
Source name
Parenchyma of an OVX animal treated with estrogen
Organism
Bos taurus
Characteristics
both the raw and normalized values are log 2 based.
Extracted molecule
total RNA
Label
biotin
Description
Single channel hybridization of biotin-labeled samples detected by Cy3-streptavidin staining
Data processing
is based on the SAS Mixed Model
Submission date
Jan 18, 2006
Last update date
May 05, 2006
Contact name
Robert W Li
E-mail(s)
[email protected]
Phone
301-504-5185
Fax
301-504-8414
Organization name
USDA
Department
Animal & Natural Resources Institute
Lab
Bovine Functional Genomics Laboratory
Street address
Barc East
City
Beltsville
State/province
MD
ZIP/Postal code
20705
Country
USA
Platform ID
GPL3711
Series (1)
GSE4054
Estrogen-responsive genes in the parenchyma and fat pad of the bovine mammary gland by microarray analysis
Data table header descriptions
ID_REF
VALUE
is the raw value (log2, geometric mean) of the 4 replicate features (spots) for each 60mer oligo
VALUE_Normalized
is the residual value (log2) normalized based on the SAS Mixed model fit across all probes
Data table
ID_REF
VALUE
VALUE_Normalized
BOV00P0000000001
10.5198093680
0.8118591040
BOV00P0000000002
1.7214398745
0.7575585697
BOV00P0000000003
1.0266099558
1.4836981484
BOV00P0000000004
1.4922401511
1.1656161205
BOV00P0000000005
2.3289390993
1.8080194970
BOV00P0000000006
8.0502139249
1.4475618279
BOV00P0000000007
0.9732307102
0.7243054830
BOV00P0000000008
2.3053363205
1.7136862832
BOV00P0000000009
6.2369181472
1.1079369117
BOV00P0000000010
6.0994708710
1.2706592789
BOV00P0000000011
0.5274127781
1.3494269467
BOV00P0000000012
2.5856242831
2.0206713104
BOV00P0000000013
0.9653501386
0.8178456739
BOV00P0000000014
0.8680913789
0.6713085660
BOV00P0000000015
1.3323164756
1.0903751605
BOV00P0000000016
1.3298680547
0.6672955214
BOV00P0000000017
2.4476900097
1.8121588809
BOV00P0000000018
3.9762306198
2.2235655417
BOV00P0000000019
52.7191273991
1.7731831576
BOV00P0000000020
1.2402560474
1.3257358570
Total number of rows:
85018
Table truncated, full table size
3573 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM92920.CEL.gz
5.7 Mb
(ftp)
(http)
CEL
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