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| Status |
Public on May 22, 2012 |
| Title |
Stanford_ChipSeq_GM12891_Pol2_IgG-mus |
| Sample type |
SRA |
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| Source name |
GM12891
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| Organism |
Homo sapiens |
| Characteristics |
lab: Stanford
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: GM12891
cell organism: human
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed
cell karyotype: normal
cell lineage: mesoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
antibody: Pol2
antibody antibodydescription: mouse monoclonal, clone 8WG16. Antibody Target: POL2
antibody targetdescription: RNA Polymerase II
antibody vendorname: Covance
antibody vendorid: MMS-126R
control: IgG-mus
control description: Input signal from Normal Mouse IgG ChIP-seq.
control: IgG-mus
control description: Input signal from Normal Mouse IgG ChIP-seq.
controlid: wgEncodeEH000709
labversion: remapped from hg18, Data paired with GM12891_IgG_Control.
replicate: 1
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| Biomaterial provider |
Coriell
|
| Treatment protocol |
None
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
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| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
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| Submission date |
May 22, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
[email protected]
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| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
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| Platform ID |
GPL9052 |
| Series (1) |
| GSE31477 |
ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard |
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| Relations |
| SRA |
SRX150367 |
| BioSample |
SAMN01000827 |
| Named Annotation |
GSM935287_hg19_wgEncodeSydhTfbsGm12891Pol2IggmusSig.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM935287_hg19_wgEncodeSydhTfbsGm12891Pol2IggmusPk.narrowPeak.gz |
366.4 Kb |
(ftp)(http) |
NARROWPEAK |
| GSM935287_hg19_wgEncodeSydhTfbsGm12891Pol2IggmusSig.bigWig |
562.6 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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